KEGG   Mycolicibacterium gilvum Spyr1: Mspyr1_22900
Entry
Mspyr1_22900      CDS       T01376                                 
Name
(GenBank) exonuclease, DNA polymerase III, epsilon subunit family
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
msp  Mycolicibacterium gilvum Spyr1
Pathway
msp03030  DNA replication
msp03430  Mismatch repair
msp03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:msp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Mspyr1_22900
   03430 Mismatch repair
    Mspyr1_22900
   03440 Homologous recombination
    Mspyr1_22900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:msp03032]
    Mspyr1_22900
   03400 DNA repair and recombination proteins [BR:msp03400]
    Mspyr1_22900
Enzymes [BR:msp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Mspyr1_22900
DNA replication proteins [BR:msp03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Mspyr1_22900
DNA repair and recombination proteins [BR:msp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Mspyr1_22900
SSDB
Motif
Pfam: RNase_T Rv2179c-like GIY-YIG
Other DBs
NCBI-ProteinID: ADT98935
UniProt: E6TG82
Position
complement(2368314..2370167)
AA seq 617 aa
MGQLSFSDVDPRADPTLRETTFVVVDLETTGGRASGDRHDAITEIGAVKVRGGEVLGEFA
TLVDPGRAIPPQIVALTGITSAMVYDAPRIESVLPSFLEFCRGAVLVAHNAGFDMGFLRA
AAERNQVPWPKPPVLCTVALARRVLTRDEAPSVKLSALARLFGASTTPTHRALDDARATV
DVLHALIERVGNQGVHTYAELRAYLPDVTPAQRRKRHLAHSLPRSPGVYLFRGPSAEVLY
VGTAVDLRRRVGQYFNGADPRTRMKEMASLATAVDHVECAHDLEAGVRELRLLAAHAPPY
NRRSKFPHRWWWVTLTDEPFPRFSTVRTPRTDSAVGPFRSRADAFDAAALMARFTGVRTC
TNRLGRKAFHGPTCPEREVSPCPAVRDADAQTYAAAVADARALIDGRDGRPLAAALSHIA
DLAERNRYETAARLRDHAAATIDVLWRGQRLRALSTIPELVAAKPDGDRGWHLAVVRHGQ
LASAGVAPRGVPPMPVVDALTAAAQSVLPGPGPLGGALVEETALIARWLGQAGVRIVRAD
AGYCSPIAAAGRWAHWAATARSARLAAEQLSASRLGSELLGEPHPTREQLFGRPGVDRLL
RPRETGLPRGNPLGVAG
NT seq 1854 nt   +upstreamnt  +downstreamnt
atgggtcagctcagcttctcggatgtggatccgcgggccgacccgacgctgcgcgagacc
acgttcgtcgtcgtcgacctggagaccaccggaggccgcgcctccggtgaccgccacgac
gccatcaccgagatcggtgcggtgaaggtgcgcggcggcgaggtgctcggcgagttcgct
accctggtcgatccgggtcgtgcgataccgccgcagatcgtcgcgctgacggggatcacg
tcggccatggtctatgacgcgcccaggatcgaatcggtactgccctcattcctcgagttc
tgccgcggagccgtgctcgtcgcgcacaacgccggcttcgacatgggtttcctgcgggcc
gcggccgaacgcaaccaggtgccgtggcccaagccgccggtgctgtgcaccgtcgcgctc
gcccggcgggtactgacccgcgacgaggcccccagcgtgaagctgtccgcgttggcccgg
ctgttcggcgcctccaccacgccgacgcaccgcgccctcgacgacgcccgggccaccgtc
gacgtgctgcacgcgctgatcgagcgggtcggcaaccagggcgtgcacacctacgccgaa
ctgcgcgcgtatctgcccgatgtcacacccgcacaacgccgtaagcgccatctcgcgcac
tcgctgccgcgcagtcccggcgtctatctgttccgcggaccgtcggcggaggttctgtac
gtcggcacggcggtcgatctccggcgccgcgtcgggcagtacttcaacggggccgatccg
cggacccgcatgaaggagatggcgtcgctggccacggccgtcgaccatgtggagtgcgcg
cacgacctggaggccggcgtgcgcgaactccgcctgctcgccgcgcacgccccgccgtac
aaccgccgctccaagttcccgcaccggtggtggtgggtgacgctcaccgacgagccgttc
ccccgcttctccacggtgcgcaccccccgcaccgacagcgcggtcgggccgttccgctcg
cgtgcggacgcgttcgacgcggcggcgctgatggcccgtttcaccggggtacgcacctgc
acgaaccgactgggccgcaaggcttttcacggaccaacctgtccggagcgggaggtctcc
ccctgccccgcggtccgcgacgccgacgcgcagacgtacgccgctgcggtggcggatgcg
cgcgcgctgatcgacggacgcgacggtcgacccctcgcggcggcgttgtcccacatcgcg
gatctggccgagcgcaaccgctacgagaccgcggcccggttgcgcgaccacgccgcggca
accatcgacgtgctctggcggggccaacgactacgggcactgtcgaccatccccgaactc
gtcgcggccaagccggacggcgaccgcggctggcacctcgccgtcgtccggcacggtcag
ctcgcatcggcgggggtggcgccgcgcggcgtaccgccgatgccggtggtggacgcgttg
accgcggccgcacagtcggtgttgcccggtccgggaccactcggcggcgcgctcgtggag
gagacggccctgatcgcacgctggctcggccaggccggggtgcggatcgtgcgcgccgac
gcgggctactgctctccgatcgccgcggcgggccgctgggcgcactgggcggccaccgcc
cgttcggcacggctggccgccgaacagctcagtgcctcacggctcggctcagagctcctg
ggtgaaccgcacccaacgcgcgagcaactgttcggccgccccggagtcgatcgcctcctt
cgcccgcgcgagaccggactcccacgcgggaacccacttggcgtcgctggatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system