KEGG   Marinobacter similis: AU14_04250
Entry
AU14_04250        CDS       T03594                                 
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
msx  Marinobacter similis
Pathway
msx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:msx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AU14_04250
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msx03019]
    AU14_04250
   03016 Transfer RNA biogenesis [BR:msx03016]
    AU14_04250
Enzymes [BR:msx01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     AU14_04250
Messenger RNA biogenesis [BR:msx03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     AU14_04250
Transfer RNA biogenesis [BR:msx03016]
 Prokaryotic type
  tRNA degradation factors
   AU14_04250
SSDB
Motif
Pfam: RNase_PH PNPase RNase_PH_C S1 KH_1 KH_2 S1_2
Other DBs
NCBI-ProteinID: AHI28114
UniProt: W5YGU6
Position
888011..890125
AA seq 704 aa
MKPVKKTFELGGKTVTLETGRIARQATGSVLVTIDDVSVLGTVVGAKEPKPGQGFFPLTV
NYTEKTYAVGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPNGYMNEVQVVLTVMSAN
KSQDPDIAAMLAASAALSISGIPFDGPIGASRVAFTNERGYFLNPTYEELETSLLDMVVA
GTEDAVLMVESEAKGLTEDQMLGGVLFAHQEMQVAVSAIKEFAAEIGKPRWEWTPEVENT
ELLTAIKGEFAGAIEEAYSIRDKMERYARLGEIKTSAVEKFAGEEEGQPSGDEVKKYFGK
IEKSVVRQQVIDGKPRIDGRDNKTVRPIEIEVGVLPSTHGSALFTRGETQAIVTTTLGTA
RDMQIIDALHGERKDPFLFHYNFPPYSVGEAGRMGSPGRREIGHGRLAKRGISAVMPTIE
EFPYTIRAVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEGDKFAVLT
DILGDEDHLGDMDFKVAGTKDGVTALQMDIKINGITDEIMELALEQAQEARLHILGEMNK
VIAESRSELSARAPSITTVKINPDKIRDVIGKGGATIRSICDETGASIDLDDDGNVKIYA
DNQEAAQAAVNRVKEITAEIEVGAIYKGRVERIVDFGAFVNLLPGKDGLVHISQISERRI
ENVTDELSEGQEVLVKVLDVDNRGRVKLSMKEVQEGEQPTDFSA
NT seq 2115 nt   +upstreamnt  +downstreamnt
ctgaaacctgtaaagaaaacgtttgagctgggcggcaagaccgtcactctcgaaaccggt
cgtattgcccgtcaggctaccggttcagttctggtaactatcgacgacgtatccgtactg
ggtaccgtggtaggcgccaaggaaccgaagccgggccagggctttttcccgctgaccgtt
aactacactgaaaaaacctacgccgttggcaagatccccggtggtttcttcaagcgtgaa
ggccgtccttcagagaaggaaaccctgacctcccgcctgatcgaccgtccgattcgtccg
ctgttcccgaatggctacatgaacgaagtccaggttgtgctgaccgttatgtctgccaac
aagtctcaggatccggacattgccgcgatgctggctgcttctgcagctctgtcgatttcc
ggtattccgttcgacggcccgattggtgcatcccgtgttgccttcaccaatgagcgtggc
tacttcctgaacccgacctatgaagagctcgaaacctcgctgctcgacatggttgttgcc
ggtactgaagacgctgtgctgatggttgaatccgaagccaaaggcctgaccgaagaccag
atgcttggtggtgttctgtttgcccaccaggaaatgcaggttgcggtcagcgcgatcaag
gaattcgctgccgagattggcaagccgcgttgggagtggactccggaagtagaaaacacc
gagctgctgaccgccatcaagggcgaattcgctggcgccatcgaagaagcgtacagcatc
cgtgacaagatggagcgttatgctcgtctgggcgagatcaagacctctgccgttgagaag
tttgccggcgaagaggaaggccagccttccggtgatgaggtcaagaagtacttcggcaag
atcgagaagtcggttgtgcgtcagcaggtaattgatggcaagccgcgtatcgatggccgt
gacaacaagaccgttcgtccgatcgaaatcgaagtaggcgtgctgcctagcacccacggt
tcggctctgttcacccgtggtgaaactcaggccatcgtaaccactaccctgggcaccgct
cgtgacatgcagatcatcgatgccctgcacggtgagcgtaaggacccgttcctgttccac
tacaacttccctccgtactccgttggcgaagctggtcgtatgggcagcccgggccgtcgt
gaaatcggtcacggtcgtctggcgaagcgcggtatttccgcggttatgccgaccatcgaa
gagttcccgtacaccatccgtgcggtttccgagatcactgaatccaacggctccagctct
atggcgtcggtatgtggttccagcttggccctgatggacgcgggtgttccgctgaaggcg
ccggttgctggtatcgccatgggtctggtcaaggaaggcgacaagtttgcagtcctgact
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaggttgccggtaccaaa
gacggtgttactgccctgcagatggacatcaagatcaacggtatcaccgacgagatcatg
gagctggccctggagcaggcacaagaagcacgtctgcacatcctgggtgagatgaacaag
gtaattgccgagtcccgttcagagctgtctgcacgtgcaccgagcatcaccaccgtcaag
atcaacccggacaagatccgtgacgttatcggtaagggcggtgctaccatccgttctatc
tgtgacgaaaccggtgcgtctatcgatctggacgacgacggcaacgtgaagatctacgct
gataaccaggaagctgcccaggcggcggttaaccgggtcaaggagatcaccgcggaaatc
gaagttggcgcgatctataagggtcgtgttgagcgcatcgttgatttcggtgccttcgtt
aacctcctgcctggaaaggatggtctggtgcacatttcccagatctctgagcgccgtatc
gagaacgtgactgacgagctgagcgaaggtcaggaagttctggttaaggttctggatgta
gataaccgtggtcgcgttaagctgtccatgaaggaagttcaggaaggcgagcagccgact
gacttctctgcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system