KEGG   Methanothrix thermoacetophila: Mthe_1363
Entry
Mthe_1363         CDS       T00417                                 
Name
(GenBank) ribosomal RNA-processing protein RRP4
  KO
K03679  exosome complex component RRP4
Organism
mtp  Methanothrix thermoacetophila
Pathway
mtp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mtp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Mthe_1363
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mtp03019]
    Mthe_1363
Messenger RNA biogenesis [BR:mtp03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     Mthe_1363
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     Mthe_1363
SSDB
Motif
Pfam: KH_6 ECR1_N RRP4_S1 KH_1 S1 RRP40_S1 KH_2 PapC_C
Other DBs
NCBI-ProteinID: ABK15138
UniProt: A0B8W4
Position
complement(1459839..1460504)
AA seq 221 aa
MDRKIVIPGDLLSEDTRRAGEGTYVRNGKVYSLLYGIASFRDRISVIPLAGKYIPAVGDN
VIGVVKDITFSNWILDINSPYDGLLHISEFPKKIDVEDMSKYLRIGSSVMARVKDVDPAM
KVELTLNDRRLGVIKTGRVVEISHTRVPRLIGKGGSMISMLKKELNCNIFVGQNGRIWVS
GNEEDMDLALKTILLIEREAHTNGLTDRIVEYIKDARRARG
NT seq 666 nt   +upstreamnt  +downstreamnt
atggaccgcaaaatcgtgatacccggggatctgctctctgaggacacaaggagagcgggt
gaaggcacatacgtgaggaacggcaaggtgtactctcttctctacgggattgccagcttc
agggacaggatcagcgtgatcccccttgcaggcaagtatatccctgcggtcggggataac
gtgatcggagtcgtcaaggacataacattctcgaactggattctggatatcaactcaccc
tacgacggtctccttcacatctccgagtttccaaagaagatagatgtcgaggatatgtca
aagtatcttcgcataggcagctcggtcatggccagggtgaaggatgtcgatcccgcgatg
aaggtggagctgaccctgaacgacaggaggcttggcgtcatcaagacggggagggtcgtg
gagataagccacaccagggttccgaggctcataggaaagggcggttcgatgataagcatg
ctcaagaaggagctgaactgcaacatattcgtcgggcagaacggcaggatatgggtcagc
gggaacgaggaggatatggacctggccttgaagaccatactcctgatcgagagggaggcc
cacacgaacggcctcacagacaggattgttgagtacattaaggatgcgagaagggccaga
ggatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (23)   

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