KEGG   Musa acuminata (wild Malaysian banana): 103990140
Entry
103990140         CDS       T03447                                 
Name
(RefSeq) uncharacterized protein LOC103990140 isoform X2
  KO
K10643  CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
Organism
mus  Musa acuminata (wild Malaysian banana)
Pathway
mus03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mus00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103990140
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mus03000]
    103990140
   03019 Messenger RNA biogenesis [BR:mus03019]
    103990140
   04121 Ubiquitin system [BR:mus04121]
    103990140
Enzymes [BR:mus01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     103990140
Transcription factors [BR:mus03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    103990140
Messenger RNA biogenesis [BR:mus03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103990140
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     103990140
Ubiquitin system [BR:mus04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    103990140
SSDB
Motif
Pfam: zf-RING_4 RRM_1 Baculo_IE-1 zf-UDP PcfJ ATG1-like_MIT2 FYVE SET_assoc Borealin
Other DBs
NCBI-GeneID: 103990140
NCBI-ProteinID: XP_009407464
UniProt: A0A804JPD3
Position
6:33044085..33055297
AA seq 1051 aa
MSDDGERTCPLCAEEMDLTDQQLKPCKCGYEICIWCWHHIIEMAEKEDTEARCPACRTPY
DKDRVLKAAPANSERIIAEIFSEKKQRPQRAKTKISAEALKHLSGARVMQKNLVYITGLP
FNLCDENILERKEYFGQYGKVLKVSISRAAGTSSQKTSTNNTFGIYVTYAKEEEAVRCIQ
AVHNYVLEGKSLRACFGTTKYCRAWLRNMTCSNPDCLYLHDIGSHGDGFTKDEMISACTR
VPQITSSSSQRRFGNVLPPPMDDFNSRLGLDKHPVKRTCINSSIQVKGSSNISAEKSNAL
PAAASWGLRGSNCQILASSIQCSRTPAIQNTQAISNSSLPSLLTTSTKQPSARDDEMLIT
SRVPESKEDVHSTSGSLEPLRLDTRADSPLTSSLETVKIVDFSLRSSLNDNAIVTSKPVE
QIKMADLDDRSSPLVSIRSDFDRQQQTLLSSTQVAPVMIGTSQVSSSCLSDTLAVALEDK
ERGSISSGSDSEPKNATTISKSTVRQFGNSNHDKVINGSAIVNDDMQSFRLGFSSVNIDA
HSVKNQLNIDQHQTSVSDLCSTEMLSSRDLNLASVTSSMIKSMDLNSEPLKQQSISIMDM
MKDPVKLQHTQFSPCGGHPQNSTSQSNSAPWSIGLGNKQPPFTDGSWDMDRKIEAAMCSI
GDDESVIHDGHSEYVINSNSSSSNGSECPGFNCMEEKTIPVDMIDIISSNNDACVDKKQE
SSIISDLLSLDFDPWDDSLSSANNLARLRGEIEENNCLKLSSSWKSLNSDQSRFSFARPE
SQAILLEPAREISDAQRLQSSSRVSHKDGFQNRVQSNDFEDVDLFIGSNTLSDRTTGVSR
AKITAPPGFLAPTISSPPGFSCPDRGNQEHDMTYLGGNHYRSHLAGSSGDVEFIDPAILA
IGKGRIHLEPNNSTLGLKYSFPAQFSTPNNDPRLHLLAQQSVSSPQNLGIPDHMGERFLQ
LNDAYIASQLLAQSHAGISPIMQLSFQHLRNPLFSNSQWDAWKSVCPGNNIGMSEKFRNG
RFGLNDYYTSTDENKFHIPSAGNLYNQAFGM
NT seq 3156 nt   +upstreamnt  +downstreamnt
atgagtgacgacggagaaaggacttgccctctgtgcgcggaggagatggacctgaccgac
cagcagctgaagccttgcaagtgtgggtatgagatttgtatctggtgttggcatcatata
attgaaatggctgagaaagaagacacagaagctcggtgtccagcatgccgcacaccatat
gacaaggacagagtccttaaagcggcacctgccaactccgagaggataatagctgagata
ttttctgagaaaaaacaaaggcctcaaagagcaaagaccaagatatcagcagaagctctg
aagcatcttagcggtgccagagtgatgcaaaagaatcttgtatacataactgggttacct
tttaatttatgtgatgaaaatattcttgagcgcaaggaatactttggccagtatgggaaa
gttttaaaggtttcaatttctcgtgcagctggcacttcttcgcagaaaacatcaactaac
aacacatttggcatttatgttacatatgccaaggaggaagaagctgttcgatgtatacaa
gctgtacataattatgtgttggaaggtaaatccttgagagcatgctttggcaccacaaaa
tattgccgtgcatggttaagaaatatgacctgcagcaatcccgattgtctgtatttgcat
gacataggtagccacggggatggttttacaaaagatgagatgatttcagcttgtacaagg
gttcctcaaattacttcttccagttctcaacgacgttttggaaatgttttgcctccgcca
atggatgacttcaacagcagattaggcttggacaagcatccagtcaagaggacctgtatt
aattcctcaatccaggttaaaggttcttctaatattagtgccgaaaagtccaatgcttta
ccagcagctgcttcatggggacttcgtggttcaaattgccagattttggcttcaagtata
caatgctctcgaacacctgcgattcaaaacacacaggctataagcaattcatctttgcct
tctttattgacgacaagcacaaagcaaccttcagcacgggatgatgaaatgcttataaca
tcaagggtacctgaaagcaaggaagatgttcattccacgtccgggtccttggaaccttta
cgacttgatactcgggcagattcaccgctgacttcatctttagagacagtcaagattgtt
gatttttctttgagatcttcattgaatgacaatgccattgtaacatcaaagccagtggaa
caaataaaaatggcagatttggatgacaggtctagtccgttagtgtctataagatctgac
tttgacaggcagcagcaaacacttttatcatcaactcaggtggccccggtcatgattggt
acctctcaggtttcttcaagttgtttatccgacactctagcagtagcacttgaagacaag
gaaagaggtagtatttcaagtggtagtgactcagagccaaaaaatgccaccactatttct
aaaagtaccgttagacaatttggcaactccaatcatgataaagttattaatggttctgct
attgtcaatgatgatatgcagagctttcgcttaggattttcttcagttaatatagatgcc
cattctgtgaaaaatcagttaaatattgaccagcatcaaacctcagtctctgatctctgt
tcaactgagatgctcagcagtcgagatttaaatttggcctctgttacatcgagcatgatt
aaatcaatggatttgaattctgaacccctaaagcaacaatcaatctctataatggatatg
atgaaggatcccgtgaaattgcagcacacacagttttcaccttgtggaggtcacccacaa
aacagtacaagtcagtcaaattctgctccctggagtattggacttggaaataaacaaccc
ccatttactgatggttcttgggacatggatagaaaaattgaggcggctatgtgttccata
ggagacgacgaatctgtaatacatgatggacacagcgaatatgttataaactcaaattct
tcaagcagtaatggttcagagtgtcctgggttcaactgcatggaagaaaagacgatacca
gtagatatgattgatataattagtagtaacaatgatgcttgtgtagataaaaagcaagag
agcagcatcatttcagatttattgtcactagattttgatccatgggatgactcattatcc
tcagctaacaatttggctaggctgcgtggtgaaattgaagaaaacaattgtttaaaatta
tcaagttcatggaaatccctaaacagtgaccagtctagattttcttttgcgagaccagaa
agtcaagcaatccttttagaacctgctagagaaattagtgatgctcagagacttcagtcc
tcatcacgagtttcacataaagatggtttccagaatcgagttcaatccaatgattttgag
gatgttgatcttttcatcggtagcaacactttgtctgataggactactggtgtttcaagg
gccaagataacagctccacctggattcttggctccaaccatatcgtcgcctccggggttt
tcttgtccagacagaggtaaccaggaacatgacatgacctacttaggtggaaatcattat
cgatcacatttagctggaagttcaggtgatgtggagttcattgatccggcgatattggct
attggtaagggacggatacatcttgaaccaaataattcaacattggggttgaaatattca
tttcctgcacagtttagcacccccaataatgatccaaggcttcatttattggctcagcaa
tcagtttcttctcctcagaacctgggaataccagatcatatgggagaaagattcttacag
ttgaatgatgcatacattgcatctcaacttttggcacaaagccatgctggtatttctcca
attatgcagttgtcattccagcatttgagaaatccactcttttcaaatagccagtgggat
gcctggaagagtgtatgccctggcaataatataggcatgagtgagaaattcaggaatggg
agatttggacttaatgactattacacaagcactgacgaaaataagttccacataccaagt
gcaggtaatctgtataaccaggcatttggaatgtaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (9)   
   Pfam (9)   
All databases (55)   

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