KEGG   Methanococcus vannielii: Mevan_1180
Entry
Mevan_1180        CDS       T00554                                 
Name
(GenBank) AAA family ATPase, CDC48 subfamily
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
mvn  Methanococcus vannielii
Brite
KEGG Orthology (KO) [BR:mvn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mvn03019]
    Mevan_1180
   03009 Ribosome biogenesis [BR:mvn03009]
    Mevan_1180
   04131 Membrane trafficking [BR:mvn04131]
    Mevan_1180
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:mvn04147]
    Mevan_1180
Messenger RNA biogenesis [BR:mvn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     Mevan_1180
Ribosome biogenesis [BR:mvn03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    Mevan_1180
Membrane trafficking [BR:mvn04131]
 SNARE
  SNARE associated proteins
   Others
    Mevan_1180
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    Mevan_1180
Exosome [BR:mvn04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   Mevan_1180
SSDB
Motif
Pfam: AAA CDC48_N AAA_lid_3 CDC48_2 RuvB_N AAA_16 TIP49 AAA_2 AAA_14 AAA_5 AAA_22 AAA_33 nSTAND3 AAA_28 AAA_18 IstB_IS21 DUF815 Mg_chelatase RNA_helicase Zeta_toxin ATPase AAA_7 Sigma54_activat AAA_17 AAA_3 ABC_tran ATP-synt_ab PhoH TsaE Bac_DnaA AAA_24 Sigma54_activ_2 AAA_19 AAA_30 Parvo_NS1 SLFN-g3_helicase bpMoxR Vps4_C Viral_helicase1
Other DBs
NCBI-ProteinID: ABR55078
UniProt: A6URF6
Position
complement(1193243..1195588)
AA seq 781 aa
MVDLMVAEAYQGDVGKGIVRIDPLTMEKLSLKPGDAIEISGKEKTYATVWRGYIEDQGKG
IIRMDGILRQNTKAGIGDKVKITVVEVKEAKKITLAPMQAVRFSTGFESYVGSRLVEQVV
DKGSKVVIGVLGTAFPFIVTGTTPKGPVKINEYTQIELKTEPVTELKETKVPNVTYEDIG
GLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANEAGANFY
TINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEASGEVERRMVAQ
LLTLLDGLESRGQVVILAATNRPDSIDMALRRPGRLDRELTIGIPDRTARKEILQIHTRN
MPLQPDYEKNNVISVLNELIGELDRNKIEEVVKKVENSAKEELIEKILKENDLEDKVKLK
LNQMMIKELADKTHGFAGADLAALSKEAAMKTLRRILPDIDLEKEEIPREVLDKIKVTRD
DFFGGLKEVEPSALREVLVEVPNVRWNDIGGLEEIKQDLKEAVEWPIKNREIFERMGIRP
PKGVLLFGPPGTGKTLLAKAVANESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAA
PTVVFFDEIDSVAPKRGMDFGSSGVTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQ
ALLRPGRLDRIVLVQVPDENARYEIFKVHAKSMPLSKDVDLKALATETKGYTGADIEAVC
REAAMIALREDINSKEVFLKHFKGALNRIAPSVKDDDMDAYKDLAREYGRSIESEKDENK
E
NT seq 2346 nt   +upstreamnt  +downstreamnt
atggtagatttaatggttgctgaagcttatcaaggcgatgtaggaaaaggaatcgtaaga
attgacccattaacaatggaaaagttatctttaaagcccggtgatgcaatagaaatttct
ggaaaagaaaaaacctatgcaacagtctggagaggatacattgaagaccaaggaaagggt
ataataaggatggatggtattttaagacagaataccaaagcaggaatcggcgataaggta
aaaattactgtagtagaagtaaaagaagctaaaaaaataactttagctccaatgcaggcc
gtaagatttagtactggctttgaaagttacgttggaagtaggctagttgaacaagttgta
gataaaggttcaaaagtagtaataggggtacttggaacagcgttccctttcattgtaacg
ggcactacgccaaaagggccggtaaaaattaacgaatacacccaaattgaacttaaaacc
gaacctgttactgaattaaaagaaactaaagttccaaatgtaacatatgaagatatcggt
ggattaaaagaagaagttaaaaaaatcagggaaatggttgaacttccaatgcggtaccct
gaattatttgataaacttggaatcgaacctccaaaaggagttttacttgcagggccccct
ggaactggaaaaacactacttgcaaaagcagttgcaaatgaagctggtgctaatttctac
actattaacggcccagaaatcatgagtaagtacgttggagaaactgaagaaaacttaaga
aagatatttgaagaagcagaagaaaactcgccttcaataatatttatcgatgaaatcgat
gcagttgcaccaaaaagagatgaagcaagcggtgaagttgaaagaagaatggttgcacag
cttttaacattattagatggtcttgaaagtaggggccaggttgtaatccttgctgcaact
aatagacctgattcaatagatatggcgcttagaagacctggaaggcttgaccgtgagctt
acaataggtattcctgatagaactgcaagaaaagaaattcttcaaattcatacaagaaat
atgcctcttcaaccagattatgaaaaaaataatgttatttcagtattaaatgaactcatt
ggtgaattagatagaaataaaattgaagaagtagttaaaaaagttgaaaattctgccaaa
gaagaactgattgaaaaaatacttaaagaaaacgatttggaagataaggtaaagttaaaa
cttaaccaaatgatgataaaggaacttgcagataaaacacatggttttgcaggggctgac
ttagcagcactttcaaaagaagctgcgatgaaaacattgcgaagaattttaccagatata
gaccttgaaaaggaagaaattccaagagaggttcttgacaaaattaaagttacaagagac
gacttttttggcggattgaaagaagttgaaccatctgcattaagagaagtacttgtagaa
gttccaaacgtaaggtggaatgatataggtggccttgaagaaataaagcaagatttaaaa
gaagctgttgaatggccaattaaaaatagagaaatatttgaacgaatgggcataaggcct
ccaaaaggcgttttattatttgggccacctggaactggaaaaacactacttgcaaaagca
gttgcaaatgaaagcgaagcaaactttataagtgtcaaaggccctgaaattttcagtaag
tgggttggagaaagtgaaaaggcaattcgtgaaatatttagaaaggcacggcaggctgct
ccaacagtagtattctttgatgaaatcgattctgttgccccaaaaagaggaatggacttt
ggaagtagtggagttactgaaaaggtcgtaaatcagcttttaaccgaacttgatggcctt
gaagaaccaaaagatgtcgtgataattgctgcaacaaataggcccgatattttagaccaa
gctttattaagacctggaagacttgataggatagttttagttcaagtgcctgatgaaaat
gcaaggtatgaaatattcaaagtacatgcaaaatcaatgcctctttcaaaagatgttgat
ttaaaagcgcttgcaaccgaaactaaaggatataccggtgcggatattgaagcagtatgt
agggaagctgcaatgattgcacttagggaagacattaattcaaaagaagtatttttaaag
cactttaaaggtgcattaaatagaattgcaccatctgtaaaggatgatgacatggacgca
tataaagaccttgcaagagaatacggaagaagcattgaaagtgaaaaagacgaaaataaa
gaataa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (39)   
   Pfam (39)   
All databases (49)   

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