KEGG   Mizuhopecten yessoensis (Yesso scallop): 110441881
Entry
110441881         CDS       T05079                                 
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
  KO
K12813  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:5.6.2.6]
Organism
myi  Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:myi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110441881
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:myi03041]
    110441881
Enzymes [BR:myi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     110441881
Spliceosome [BR:myi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    110441881
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    110441881
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_N HA2_C DEAD AAA_22 AAA_19 PWI nSTAND3 AAA_30 T2SSE Flavi_DEAD
Other DBs
NCBI-GeneID: 110441881
NCBI-ProteinID: XP_021340842
Position
Unknown
AA seq 1038 aa
MEMLETWVNDKLHDIVGISDKHITQYMIGLAKKAASTEHFVESIKDTGVIDIDTNVLGFA
RELWGKVPHKAEAEKVGRKREREALELQKKNDSYTVLSDEDSEEETYLPKKKEKKDRKQK
HFRKKRESSDESSEEESRMNLDKDDPLTDSDSEDEFDQQEQQRLQDIDERDQFAKRLRDK
DKASTRQIMSKSEKKALEEAKKRLEMEAEDKKKLIPEIREKSRQEYLKKRGTQKLEDLEA
DIIDEEYLFSETKLTEKERKNLNYKKKVLEIAKDHRRAGEKEKVNRYHMPKEDDKPSERY
EEEVLEKGVNSEQQRWEEDHLGAAIMKFGARDAKQRAKEKNKTKDYDFIMDEEIEFVQAL
QMPGSKKTKDKEPEMSDAERKKMTIEECKKSLPVFPFKQDLLDAIEEHQVLIIEGETGSG
KTTQIPQYLHEGGFTKNGMKIGCTQPRRVAAMSVAARVAEEMGKKLGNEVGYSIRFEDCT
SDRTIIKYMTDGMLLREFLGEPDLASYSVMIIDEAHERTLHTDVLFGLVKDIARFRPDLK
LLISSATLDAEKFSAFFDDAPIFRIPGRRFPVDIYYTKAPEADYLDAAVVSVLQIHVTQP
SGDVLVFLTGQEEIESCNEMLQERTKKLGSKIKELIISPIYANLPSDMQAKIFEPTPPGA
RKVVIATNIAETSLTIDGIKYVIDPGFCKQNSYNARTGMESLIVTPISKASANQRAGRAG
RVSAGRCFRLYTAWAYKNELEDNTIPEIQRTNLGNVVLMLKSLGINDLIHFDFMDPPPHE
TLVLALEQLYALGALNHRGELTKLGRRMAEFPVDPMMSKAILASEQYKCSKEILSVCAML
SVNNAIFYRPKDKVVHADTARQNFFRPGGDHLTLLNVYDQWEETSHSTQWCYENFIQHRS
MKRARDVRDQLEGLLERVEIEMTTSPGDTIAIRKAITAGFFYHTARLGKGGNYRTVKHQQ
TVLVHPNSSLFEDRPRWLIYHELVFTTKEFMRQVIEIENSWLLEVAPHYYKSKELEDTSK
RKMPKNTGKTLDDVTRQY
NT seq 3117 nt   +upstreamnt  +downstreamnt
atggagatgcttgaaacttgggtgaatgacaagcttcatgacattgtcggcatttcagac
aagcatataacccagtacatgataggattggcaaaaaaagcggcctcaacagagcatttt
gtcgagtccatcaaagataccggagtcatcgacatcgacacgaacgttttaggttttgcc
cgggaattatggggaaaggtaccgcataaagctgaggctgagaaagtcgggaggaaaaga
gaacgagaggcactagagttacaaaagaaaaatgacagctacacagttctgtcggatgag
gacagtgaagaagaaacttatttacccaaaaagaaggaaaagaaagatagaaagcagaaa
catttcaggaaaaagcgcgaatcgtctgatgaaagcagtgaagaagaaagtcggatgaac
cttgataaagatgacccgctgacagactcggactcggaggatgagtttgaccaacaggaa
caacagagattacaggacattgacgagagggatcaatttgccaaacgccttcgtgacaaa
gacaaagccagcacacgccagatcatgtctaagtcagagaaaaaggctttggaagaagca
aaaaaacgtttggaaatggaggcagaggataagaaaaaacttattcctgaaataagggag
aaatcccgacaggagtacctaaagaaaagaggaacacagaagctggaggacttggaggct
gatatcatagatgaggagtatctcttttctgaaacaaaactaacagaaaaggaaagaaaa
aatctgaattataagaagaaagttttggaaatagccaaagaccatcgacgagcaggggaa
aaggagaaggtgaaccgttaccatatgccaaaggaagacgacaagccatctgaacgctat
gaggaagaggtccttgaaaagggagttaactctgaacaacagcgctgggaagaggatcat
cttggtgctgctatcatgaaatttggggcgcgtgatgctaaacaacgagcaaaagaaaaa
aacaaaaccaaagactatgatttcatcatggatgaggaaatagaatttgtgcaggcacta
cagatgccaggaagtaagaaaaccaaggataaagagccagagatgtcggatgcggagagg
aagaagatgacgatagaagaatgtaaaaagagccttccagtgtttcctttcaagcaggat
ttattggatgctatagaggaacaccaggtcctcattattgagggggagaccgggtcagga
aagaccacacagatcccacagtacctacatgaagggggtttcacaaagaatggcatgaag
attggatgtacacagccgcggagagtggcagccatgtcagtggcagctcgtgtggccgag
gaaatgggcaagaaactgggaaatgaggttgggtacagtatccgttttgaagattgtacc
tcagataggactatcataaagtacatgacagatggtatgttactgagagagttcctgggg
gagcctgacctagccagttacagtgtgatgataattgatgaggcccatgagcgtaccctc
cacacagatgtcctgtttggactggtcaaggacatcgcccgcttcagaccagacctcaag
cttctcatatcaagtgctacactggacgcagaaaaattctccgcgttttttgatgacgcc
cccatctttcgcattcctgggcgacgttttcctgtggacatctattacaccaaggctcca
gaggctgactaccttgatgctgctgttgtgtctgtactgcaaatccatgtaacacagcct
agcggtgacgtcctggtgttcctcacaggccaggaggagattgagtcatgtaacgagatg
ttacaggagagaactaagaagcttgggagtaagataaaggaattaatcatctcgccgatc
tacgccaaccttccatcagacatgcaggccaagatatttgagcccacacccccaggagcc
aggaaggttgtcatagctaccaacatagccgagacatctttgacaatagatggcatcaag
tatgtcatagatccaggcttctgtaaacagaatagctacaatgctaggacaggcatggag
tccctcattgtcacacctatatctaaggcctcagctaaccaacgagcaggtcgtgcggga
agagtgtctgcggggaggtgttttcgtctgtacacggcttgggcgtacaaaaacgagctt
gaagataatacaataccagaaatccagcgaactaacctgggaaatgtggtgctcatgctc
aagtcactgggcatcaatgaccttattcattttgacttcatggacccaccaccccacgag
acccttgtcctcgccctggaacagttgtacgctctcggggctctcaaccatcgtggagag
ctcactaaactggggcgtcgcatggctgagttccccgtagaccccatgatgtccaaagct
atattggcatcggagcaatacaagtgctctaaggagatcctgtcggtttgtgctatgctg
tccgtcaataacgctatattttaccgccctaaagacaaggtcgtccatgctgacacagct
cgacaaaactttttccgtccaggtggtgaccacctgaccctgctgaatgtgtacgaccaa
tgggaggaaacctctcactccacacagtggtgctacgagaacttcattcagcatcggtcc
atgaagcgagctcgggatgtccgcgaccagctggaggggctattggaaagggtggagatc
gagatgaccaccagccctggtgacaccatagctatccgcaaggccattactgctggattt
ttctaccacactgcacgacttggcaagggaggtaattaccggactgtgaagcatcaacag
acagtcctggtccaccccaacagtagcctatttgaggaccgacctcgctggcttatttac
catgaacttgtgtttactaccaaagagttcatgagacaggtgatagagatagagaactcc
tggctcctagaggtcgcacctcactactacaagtctaaagaactggaggacacctcaaaa
cggaaaatgccaaaaaatacagggaaaactctggatgatgttacaagacagtattga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (130)   
   KEGG ORTHOLOGY (1)   
   RefGene (126)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (150)   

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