KEGG   Mizuhopecten yessoensis (Yesso scallop): 110463538
Entry
110463538         CDS       T05079                                 
Name
(RefSeq) exosome complex component RRP42-like
  KO
K12589  exosome complex component RRP42
Organism
myi  Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:myi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110463538
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:myi03019]
    110463538
Messenger RNA biogenesis [BR:myi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     110463538
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     110463538
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 110463538
NCBI-ProteinID: XP_021373874
Position
Unknown
AA seq 290 aa
MVDVQLSDAEKVFILHGVQDNCREDGRGCEDYRHLEIETSVMSNTNGSARVRLANTDILV
GVKAELGTPSPEKLNKGRIEFFVDCSANATPEFEGRGGEDLATDISNMLYRAYDCPNCFD
LQQLCVIPDQQCWILYVDILLLECGGNLFDATSLAVKAALFNTSIPTVTVTKDEGVVDLE
ISDDPYDVQRLDMKSSPCIVTLSKVGHSHVVDASQKEECCTLARLIMGVTEKGTITALKK
EGSGSLDPTSIEDMMETGRRVGESLNKCLMDALAEEERQGTKKKSLGFLR
NT seq 873 nt   +upstreamnt  +downstreamnt
atggttgatgttcaactcagcgacgcagagaaagtatttattttacacggtgtccaagat
aactgtcgtgaagatggcagaggatgtgaggactacagacatttagaaattgagacaagt
gtcatgtccaatacgaatggatcggctcgagtcagattggcaaacacagatatcctggtt
ggagtaaaagcagaattagggactccgtcccctgaaaagcttaataagggacgaatcgag
ttctttgtggactgctcggctaatgctacgcccgagtttgagggcaggggaggagaggac
ctggccacagatatcagtaacatgctgtatcgggcttatgactgcccaaactgttttgac
ctacagcagttgtgtgtaatccctgaccagcagtgttggatactgtatgttgatatcctg
ctcctggaatgtgggggtaacctctttgatgccacatcacttgcagtaaaggcagcactt
tttaatacaagtataccaacagtaaccgttactaaagacgaaggagtggtagacctagaa
atctcagacgacccgtatgatgtgcagagactggacatgaaatcctcgccctgtattgta
accctcagtaaggtgggccattcacatgtggtagatgccagtcagaaggaggagtgctgt
actttagccaggctcatcatgggagtgacagaaaaagggacaataacagctctgaaaaag
gagggatcaggcagtctggaccccaccagtatagaagacatgatggagactggtagacgg
gtcggagaatctcttaataaatgtttgatggacgcgttggccgaggaggaaagacagggc
accaagaaaaaatcacttggatttctgagatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (36)   

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