KEGG   Myxococcus hansupus: A176_001278
Entry
A176_001278       CDS       T04077                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
mym  Myxococcus hansupus
Pathway
mym03030  DNA replication
mym03410  Base excision repair
mym03420  Nucleotide excision repair
mym03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mym00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A176_001278
   03410 Base excision repair
    A176_001278
   03420 Nucleotide excision repair
    A176_001278
   03430 Mismatch repair
    A176_001278
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mym03032]
    A176_001278
   03400 DNA repair and recombination proteins [BR:mym03400]
    A176_001278
Enzymes [BR:mym01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     A176_001278
DNA replication proteins [BR:mym03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     A176_001278
DNA repair and recombination proteins [BR:mym03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     A176_001278
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     A176_001278
   MMR (mismatch excision repair)
    DNA ligase
     A176_001278
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      A176_001278
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2 RNA_pol_A_CTD RUBY_RBDX
Other DBs
NCBI-ProteinID: AKQ64366
UniProt: A0A0H4WLU2
Position
complement(1490854..1492872)
AA seq 672 aa
MDDFQKAAARARELHRELAHHNYRYYVLDSPEVSDAQYDKLMRELQDLEAKHPDLQTPDS
PTQRVGGAAAEEFGEVVHRAPMLSLANLFEDQGLIEFDERIRKLVGQPAITYVCEPKLDG
LAIALRYEKGAFVQGATRGDGTTGEDVTTNLRTIRSLPMTLFPQDGVKVPEVLEVRGEVF
IRKKDFQKLNEKREEEGEPLFANPRNAAAGSLRQLDPKETATRPLSVFLYECVPTEGVPA
FKTHVEKLEYLKTLGLPTNQYRLAEGLEGVRGAYDASLKGRHELPFEVDGMVVKVDDEDQ
RKRLGQVSKSPRWAVAYKFPPEEESTEVQDIGIQVGRTGALTPVAHLKPVKVGGVTVARA
TLHNEDELRRKDVRKGDTVFVRRAGDVIPEIVSVVLSKRPADSAPFEFPKHCPVCNAVAT
KDEDGAIIRCTGASCPAQLVEKIRHFASRLAMDIEGLGDKLAAQLVATGRVKTFADLYAL
DREKLLSLERMGDKSADNLVTALERSKQTTQRRFLYALGIRHVGDATAKALAEAFPEAEL
LFKASLEDVSRVKDVGPIMAQVIHTFFQEPQNQAAIRELLAAGVKPAAPQVATGGPFVGK
SVVLTGAMTGMTREQAKEEVERRGGKVAGSVSRKTDFVVAGEDAGSKLKKAQELGVRILD
EQAFLQMLQGNA
NT seq 2019 nt   +upstreamnt  +downstreamnt
gtggacgacttccagaaagccgcagcccgagcccgtgagctccaccgtgagctcgcgcac
cacaactaccgttactacgtcctcgactcgcccgaggtcagcgacgcgcaatacgacaag
ctgatgcgcgagctgcaggacctggaggcgaagcatccggacctccagacgccggactcg
cccacccagcgcgtgggcggcgccgcggccgaggagttcggcgaggtggtgcaccgggcg
cccatgctctccctggccaacctcttcgaggaccagggcctcatcgagttcgacgagcgc
atccgcaagctggtgggccagcccgccatcacctacgtgtgcgaacccaagctggacggg
ctcgccatcgccctgcgctatgagaagggcgccttcgtccagggcgccacgcgcggcgac
ggcaccaccggcgaggacgtcaccaccaacctgcgcaccatccgcagcctgcccatgacg
ctgttcccccaggacggcgtgaaggtgccggaggtcctcgaggtgcgcggcgaggtcttc
atccgcaagaaggacttccagaagctcaacgagaagcgcgaggaggaaggcgagccgctc
ttcgccaacccgcgcaacgccgccgccggcagcctgcgccagctcgacccgaaggagacg
gcgacccgccccctgtccgtcttcctgtacgagtgcgtccccaccgagggcgtgcccgcc
ttcaagacgcacgtcgagaagctggagtacctgaagacgctgggcctgcccaccaaccag
taccgcctcgcggagggactggagggcgtgcgcggcgcctatgacgcctccttgaagggc
cgccacgagctgcctttcgaagtggacggcatggtggtgaaggtggatgacgaggaccag
cgcaagcgcctgggccaggtctccaagagcccccgctgggcggtggcctacaagttcccg
cccgaggaggagtccacggaggtgcaggacattggcatccaggtgggccgcacgggcgcg
ctgacgccggtggcgcacctcaagccggtgaaggtgggcggcgtcacggtggcgcgcgcc
acgctgcacaacgaggacgagctgcgccgcaaggacgtgcgcaagggcgacaccgtcttc
gtgcgccgcgcgggtgacgtgattcccgaaatcgtgtccgtggtgctctccaagcgcccc
gcggactccgcgcccttcgagttccccaagcactgccccgtctgcaacgcggtggcgacc
aaggacgaggacggcgccatcatccgctgcacgggcgcctcgtgccccgcgcagttggtg
gagaagattcgccacttcgccagccggctggccatggacatcgagggcctgggcgacaag
ctggccgcgcagctcgtggccactggccgggtgaagacgttcgcggacctctacgcgctc
gaccgggagaagctgctgtcgctggagcgcatgggcgacaagagcgccgacaacctcgtc
accgcgctggaacgctccaagcagaccacgcagcgccgcttcctctatgccctgggcatc
cgccacgtgggtgacgccaccgccaaggcgctggccgaggccttcccggaggcggagctg
ctcttcaaggccagcctggaggacgtctcgcgcgtgaaggacgtgggccccatcatggcc
caggtcatccacaccttcttccaggagccccagaaccaggccgccatccgggagctgctg
gccgcgggcgtcaagccggcggcgccccaggtcgccaccggcggccccttcgtgggcaag
tccgtggtgctcaccggcgcgatgacgggtatgacgcgggagcaggccaaggaagaggtc
gagcgccgaggcggcaaggtcgctggaagtgtctcgcgcaagaccgatttcgtggtggcg
ggcgaggatgcaggcagcaagctgaagaaggcccaggaactcggggtaagaatcctggat
gagcaggcgttcctgcagatgctgcagggcaatgcctag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (31)   

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