KEGG   Maylandia zebra (zebra mbuna): 101481324
Entry
101481324         CDS       T02814                                 
Symbol
dhx40
Name
(RefSeq) probable ATP-dependent RNA helicase DHX40
  KO
K18711  ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
Organism
mze  Maylandia zebra (zebra mbuna)
Brite
KEGG Orthology (KO) [BR:mze00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mze03019]
    101481324 (dhx40)
Enzymes [BR:mze01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     101481324 (dhx40)
Messenger RNA biogenesis [BR:mze03019]
 Eukaryotic type
  mRNA processing factors
   Other processing factors
    101481324 (dhx40)
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C HA2_N AAA_22 DEAD AAA_19 DUF4685 Flavi_DEAD T2SSE AAA_16 nSTAND3 Herpes_ori_bp AAA_18
Other DBs
NCBI-GeneID: 101481324
NCBI-ProteinID: XP_004543960
Position
LG14:14864565..14871638
AA seq 740 aa
MSKSAKWSPKEDESKRLPIYQHKSKLIQAVRDCSFLVVTGETGSGKTTQLPQYLREAGFC
KDGKIGITQPRRVAAITVAQRVAQEMQCTLGKEVGYQVRFDDCTSQDTVVKYMTDGCLLR
EVLADPALSQYSVIILDEVHERSLNTDILLGLIKKVFTDPAKATKGRSFPLKVVVMSATL
ETDKLSAFLSNCPVFAIPGRTFPVTCTFGSAVGPKDLESTGYVKEVVKVALDIHTSEMAG
DILVFLTGQSEIEHACDMLFEKAECIDYRYDVTDQSVDGLLILPLYGSMPTDQQRQIFQP
PPPRIRKCVVATNIAATSLTINGIKYIVDSGFVKQLNHNSRVGMDILEVVPISKSEAQQR
AGRAGRTSAGKCFRIYTKEFWEKCMPEYTIPEIQRTSLTAVILTLKCLGIHDVIRFPYLD
CPEERFILEALKQLYQFDAIDRRGNVTKLGELMVEFPLHPGLTRALLKAASLGCQDLLLA
VAAMLSVENIFIRPGHPDKQKEADKKHRALAAKTGSMNDFATLLSVFQSCKSSDRPSAWC
KENWIHWRALKSAFSVETQLRDILHRLQQKKDFPVETFDGNKSELFRRCLCTGYFSNVAR
RSIGKVFCTMDGHGSMVHIHPSSSLFDQEGELNWVIFHDVLATSRVYIRTVCPIRYEWVK
DLLPKLHEVDAYELSSVAREEVTAEEMTKWESREAAKRQSEVSDEDAMKKLEKRNDETTV
SEARARYLQRKQQRQQSKPL
NT seq 2223 nt   +upstreamnt  +downstreamnt
atgtcaaaatcagcgaaatggagcccaaaagaagacgagtcaaaacgtctgcccatctat
cagcacaaaagcaaactaattcaagctgtcagagactgcagcttcctggtggtcaccggt
gagactggcagcgggaaaaccacacaactcccacagtacctgcgtgaagcaggtttttgt
aaagatggcaaaattggcatcactcagccgcgcagggtcgctgccatcactgtggcccag
agggtagcccaggagatgcagtgcactctgggaaaggaagttggctatcaggtccgcttt
gatgactgcacgtcacaggacacggtggtgaagtacatgacagacggctgtttgctgagg
gaggtgctggcagaccctgcactctctcagtacagtgttataatcttggatgaagtccat
gaacgcagccttaacacagacattctcttgggtttaataaagaaagtcttcactgaccca
gccaaggccaccaagggccgatccttccctctgaaggtggtggtgatgtcggccactttg
gaaacggacaaactatcagcttttcttagtaactgccccgtcttcgctattcctgggagg
acgtttcctgtaacctgcacgtttgggtcggctgttggacctaaagatctggaaagcact
ggttatgtaaaagaggttgtgaaagtggctctggacattcacactagtgaaatggctggg
gatattctggtgtttttgacaggtcagtctgagattgaacacgcctgtgacatgctgttc
gagaaagccgagtgcatagactatcgctatgatgtaacagaccaatcagtggatggcctt
ctcattttgcccctttatggatccatgcctactgatcaacaacggcagatctttcagcca
ccacctccaagaataagaaagtgtgtcgtggccacaaacattgctgcaacctctctcacc
atcaatggcataaagtacattgtggacagtggcttcgtgaagcagctcaaccacaattcg
agggtgggcatggatatcttggaggttgtgcctatttcaaagagtgaggcgcagcagaga
gcgggtcgagctggaagaacttcagctgggaaatgtttcagaatctataccaaggaattc
tgggagaagtgtatgcctgaatacacaattccagagatccagaggacgagtctgaccgct
gtgatactcacgctgaagtgcctgggaattcatgatgtcatcaggtttccttatctggac
tgtccagaggaaagattcatactagaagcactaaagcagctctaccagtttgatgccatc
gacagaagaggaaatgtgacaaagcttggggagctgatggtggagttccccctacaccca
ggcctcaccagggccctgctcaaggctgcctccctcggctgccaagacctgttgcttgct
gtggcggccatgctgtcggtggagaacatcttcatcaggccaggccaccctgataagcag
aaagaggcagataagaagcaccgagcgctggctgcaaagactggcagtatgaacgacttt
gccacacttctcagtgtctttcagtcctgcaaatccagtgatcgaccttcagcgtggtgt
aaagagaactggatccactggagggcgctgaagtcagcctttagtgtggagactcagcta
cgagacatcctccaccgactccagcagaaaaaagatttccctgtagaaacatttgatggc
aacaagagtgaactctttaggcgatgcctctgcacaggatacttcagtaacgttgcaaga
aggtctattggaaaggtgttttgtacaatggatggccatggatcaatggttcacattcat
ccatcctcatctctatttgaccaggagggagagctgaactgggtcatcttccatgatgtg
ctggcgacatcacgggtgtacatccggactgtttgtcctattcgatatgagtgggtgaaa
gatttattacccaaactccatgaagtggacgcctatgaactgagcagtgtggcgagagaa
gaagttacagccgaggaaatgacaaaatgggagtccagggaagccgccaaaagacaatca
gaggtttctgatgaggatgcaatgaagaagctggagaagcgaaacgacgaaaccacagtg
agcgaagctcgtgctcgctacctgcagcgaaagcagcaaaggcagcagagtaaacctctc
tga

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (14)   
   Pfam (14)   
All databases (32)   

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