KEGG   Candidatus Nitrosopelagicus brevis: T478_0330
Entry
T478_0330         CDS       T03537                                 
Name
(GenBank) tRNA-splicing ligase RtcB
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
nbv  Candidatus Nitrosopelagicus brevis
Brite
KEGG Orthology (KO) [BR:nbv00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:nbv03016]
    T478_0330
Enzymes [BR:nbv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     T478_0330
Transfer RNA biogenesis [BR:nbv03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    T478_0330
 Prokaryotic type
   tRNA splicing ligases
    T478_0330
SSDB
Motif
Pfam: RtcB DUF3492 Complex1_LYR
Other DBs
NCBI-ProteinID: AJA92673
UniProt: A0A0A7V1F1
Position
281263..282711
AA seq 482 aa
MTDLKPKKIGENQYQIDADSSLGMKVPVTIYANDVLLEKMMTDRTIKQAVNVSTLPGIQE
HSIVLPDGHEGYGFPVGGVAAMDAEEGMISPGGVGYDINCGVRLLRTNLTEEQVRPKLND
LVNDLFKSIPSGVGSKGAVRLTQSELDEVLVKGVSWAIDNGYGTNDDANVCEENGQMANA
DPNKVSDKARKRGLPQLGSLGSGNHFLEVQRVQEIHDEEAAKRMGIEEGTITVLIHCGSR
GFGHQVCSDYLRISEQVQEKYDINLADRELACVPNTSEEGESYRKAMFAALNFAWSNRQM
ITHWTRKSFERVFSQSESDLDMKLVYDVAHNIAKVEKHRIDGKQKKVVVHRKGATRAFPA
NMDEVPSKYRDLGQPVLVPGSMGTGSWILLGNENSMSASFGSTAHGAGRMMSRSKARRNF
TESEVKKSLNDKGIFIKSLTRDGVVEETPQAYKDVDSVVNVSHNLGIATKVAKLVPIGVI
KG
NT seq 1449 nt   +upstreamnt  +downstreamnt
atgactgatttgaaaccaaaaaaaataggtgaaaatcagtatcagattgatgctgattca
tcactaggaatgaaagtacctgtaacaatttatgctaatgatgtattattagaaaaaatg
atgactgatagaacaatcaaacaagcagtaaatgtatcaacactgcctggaattcaagaa
cattcgatagttttacccgatggtcatgaaggatatggatttcctgtaggtggagttgct
gcaatggatgctgaagaaggaatgattagtcctggtggtgttggttatgacattaattgt
ggtgtaagactgttaagaacaaatcttactgaagaacaagttagaccaaaacttaacgac
cttgttaatgatcttttcaaatctattccgtctggagttggttcaaaaggagctgttcgt
ttgacacaatctgaattggatgaagtattggtgaaaggtgtatcatgggcaattgacaat
ggatatggcacaaatgatgatgcaaatgtatgtgaggaaaatggacaaatggcgaatgca
gatccaaacaaagtatctgataaagcacgaaagcgcggattaccacaactaggaagttta
ggttctggaaatcattttcttgaagtccaacgtgtacaagaaattcatgacgaagaagct
gcaaaaagaatgggaatagaagaaggaacaatcaccgtattgattcattgtggttctcga
ggttttggtcatcaggtttgtagtgattatttacgaatctctgaacaagttcaagaaaaa
tatgatatcaatttagcagatagagaacttgcatgtgttccaaatacttctgaagaggga
gaatcttacagaaaagcaatgtttgcagcattaaattttgcatggagtaatagacaaatg
attactcattggacacgaaaatcttttgaaagagtattttctcagtctgaatccgattta
gatatgaaattagtttatgatgtggcacataatattgccaaagttgaaaaacacaggatt
gatggaaaacaaaagaaggttgttgtacatagaaagggtgctactcgtgcttttcctgct
aacatggatgaagttcctagtaaatatagagatcttggtcaacctgttttagttcctggt
tctatgggtactggaagttggattcttttgggaaatgaaaattcaatgtctgcaagtttt
ggttcaacagctcatggagctggaagaatgatgtctcgttctaaagcaagacgaaatttt
acagaatccgaagtaaaaaaatcccttaatgataaaggcatttttataaaatctctgaca
agggatggtgtggttgaagaaacacctcaagcctacaaagatgttgattctgtagttaat
gtatctcataatcttggcatagcaacaaaggtagctaaattagttccaattggagtgatc
aagggatga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (122)   
   KEGG ORTHOLOGY (1)   
   RefGene (119)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (131)   

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