KEGG   Nocardioides sp. JS614: Noca_4601
Entry
Noca_4601         CDS       T00443                                 
Name
(GenBank) ATP-dependent RNA helicase CsdA
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
nca  Nocardioides sp. JS614
Pathway
nca03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nca00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Noca_4601
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nca03019]
    Noca_4601
   03009 Ribosome biogenesis [BR:nca03009]
    Noca_4601
Enzymes [BR:nca01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Noca_4601
Messenger RNA biogenesis [BR:nca03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Noca_4601
Ribosome biogenesis [BR:nca03009]
 Prokaryotic type
  rRNA helicases
   Noca_4601
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 HEM4 adh_short UvrA_inter P-loop_SecA AAA_22
Other DBs
NCBI-ProteinID: ABL84096
UniProt: A1SQL1
Position
complement(4875022..4876791)
AA seq 589 aa
MSSDEQDDTTTPEVTFADLGLSDQVLKALADVGYEKPSAIQAATIPPLLAGRDVVGLAQT
GTGKTAAFALPILSRLDLTQTTPQALVLAPTRELALQVCEAFERYAAHVKGVHVLPVYGG
QGYGVQLSALRRGVHVVVGTPGRIMDHLEKGTLDLSELRFLVLDEADEMLNMGFAEDVET
ILADTPDDKNVALFSATMPAQIRRISKKYLDDPAEITVKGKTATASNITQRYLTVSYPQK
VDALTRILEVENFEGMIVFVRTKNETETLAEKLRARGLSAMAINGDVAQAQRERTVNQLK
SGKLDILVATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPR
ERYLLKHIEKATRQPLTQMQLPTVEDVNSTRLSRFDDAITEALSQTQRIDAFRDIVAHYV
REHDVPEADVAAALAVVAQGETPLLLDPADRANELRAPREERAGQGTRRDRHDHGGPGGH
GGPPRERRPRGRSDVPMATYRIAVGKRHKVEPRQIVGAIANEGGLSRQDFGHIDIRGDHS
LVELPADLPAGAWDSLRSTRISGKLIELTRDGGGPAADTRHKKPRHKTR
NT seq 1770 nt   +upstreamnt  +downstreamnt
gtgagcagcgacgagcaggacgacacgaccacccccgaggtgacgttcgccgacctcggg
ctcagcgaccaggtgctgaaggcgctggccgacgtcgggtacgagaagccctccgcgatc
caggccgccacgatcccaccgctcctggccggccgtgacgtcgtcggcctcgcgcagacc
ggcaccggcaagaccgcggcgttcgcgctgccgatcctctctcggctggacctcacgcag
acgacgccgcaggcgctggtgctggcgccgacccgcgagctcgcgctccaggtctgcgag
gcgttcgagcggtacgccgcgcacgtcaagggcgtgcacgtgctgccggtgtacggcggg
cagggctacggcgtccagctcagcgcgctgcgtcgcggcgtgcacgtcgtcgtcggcacc
cccggccggatcatggaccacctggagaagggcacgctcgacctgtccgagctgcgcttc
ctggtcctcgacgaggccgacgagatgctgaacatgggcttcgccgaggacgtcgagacg
atcctggccgacacccccgacgacaagaacgtcgcgctgttctcggccacgatgcccgcg
cagatccgccggatctcgaagaagtacctcgacgaccccgccgagatcaccgtcaagggc
aagacggccaccgcctcgaacatcacccagcgctacctgacggtgtcctacccgcagaag
gtcgacgccctcacccggatcctcgaggtcgagaacttcgagggcatgatcgtcttcgtc
cgcaccaagaacgagaccgagacgctggccgagaagctccgagcccgcggcctgtccgcg
atggcgatcaacggcgacgtcgcccaggcgcagcgcgaacgcacggtcaaccagctgaag
tcgggcaagctcgacatcctggtcgccaccgacgtcgccgcccgcggcctggacgtcgaa
cggatcagccacgtcgtgaactacgacatccccaccgacaccgagtcctacgtgcaccgg
atcgggcgcaccgggcgggccgggcgcagcggcgacgcgatctcgttcgtcaccccccgc
gagcgctacctgctcaagcacatcgagaaggcgacccggcagccgctgacccagatgcag
ctgcccaccgtcgaggacgtcaacagcacccgtctgtcccgcttcgacgacgcgatcacc
gaggcgctctcgcagacccagcggatcgacgcgttccgcgacatcgtcgcccactacgtc
cgcgagcacgacgtgcccgaggccgacgtcgccgcggccctcgcggtggtggcccagggg
gagaccccgctgctgctcgatccggccgaccgcgcgaacgagctccgggcgccccgcgag
gagcgcgccggccagggcacccgccgggaccgccacgaccacggcggccccggcggccac
ggcggcccgcctcgcgagcgccggccccgcgggcgcagcgacgtcccgatggcgacgtac
cggatcgcggtgggcaagcgacacaaggtcgagcctcgccagatcgtcggggcgatcgcc
aacgagggcggcctgtcgcgccaggacttcgggcacatcgacatccgcggcgaccactcg
ctggtcgagctgcccgccgacctcccggccggcgcgtgggacagcctgcgctcgacccgg
atctccgggaagctgatcgagctcacccgcgacggcggcggccccgcggccgacacccga
cacaagaagccccgccacaagacccgttga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (44)   

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