KEGG   Notothenia coriiceps (black rockcod): 104958708
Entry
104958708         CDS       T04920                                 
Symbol
kdm2a
Name
(RefSeq) LOW QUALITY PROTEIN: lysine-specific demethylase 2A
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
ncc  Notothenia coriiceps (black rockcod)
Pathway
ncc03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ncc00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    104958708 (kdm2a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ncc03000]
    104958708 (kdm2a)
   04121 Ubiquitin system [BR:ncc04121]
    104958708 (kdm2a)
   03036 Chromosome and associated proteins [BR:ncc03036]
    104958708 (kdm2a)
Enzymes [BR:ncc01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     104958708 (kdm2a)
Transcription factors [BR:ncc03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    104958708 (kdm2a)
Ubiquitin system [BR:ncc04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   SCF complex
    Target recognizing subunit (F-box)
     104958708 (kdm2a)
Chromosome and associated proteins [BR:ncc03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    104958708 (kdm2a)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     104958708 (kdm2a)
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like JHD F-box JmjC TFIIA Cupin_8 LRR_6 Cupin_1 LRR_8
Other DBs
NCBI-GeneID: 104958708
NCBI-ProteinID: XP_010784781
UniProt: A0A6I9PFW4
Position
Unknown
AA seq 1299 aa
MAGGQKRGVNVWKINPCYCDARTGTRRRYQDDGISDDEIEGKRMFDLDEKLQCSRFNSEL
IKHMEGKDFTFEYIQREGLREPIIFEVANGLGIQMPDSDFSVSDVKLFVGSRRIVDVMDV
NTQKGIEMSMAQWRRYYDTPPSEREKLYNVISLEFSHTKLENLVKRPASVDLIDWVDNMW
PRHLKERQRDSTNAIIDMHYPKVQKYCLMSVQGCFTDFHIDFGGTSVWYHILRGGKVFWL
IPPTPQNLEMYENWVLSGKQGDIFLGDKCFDCQRIELKQGNTFIIPSGWIHAVYTPEDTL
VFGGNFLHSFNIPMQLNIYSIEDRTRVPAKFRYPFYYEMCWYVLERYLYCQTNISHLTPE
FKKYSLGVGLTKADMENIDSNKNGTSNGVDSDTENKEIKEEAVKEQDEEEAKETQAQHLL
TPFELEGLWNLLGKLEGLPEQKKCVPVGILNPDALLDDVKTLLKGHVNDDAKLSYTGEPI
VKWPKRPSWYQPPTPPPPVIYRPRLGTKPLRSIKRSSISALRRRRVRCKRCAACCRKECG
TCQFCHDMRKFGGPGRMKKGCIMRRCLAPALPNTARCAICVEGESDESNPSTHSLMECSV
CSQIVHRQCNKEPGEGKINKDLPSCWECPKCYHGKDSGSESTSDEESGESEGSTALPPIK
RAYREGIGVGARRGTRSSSSSRPTAPPPSQKLLLQHQQNRQRANALELRLKKRIKLERSK
ILTKQSSQERSLRSLCSRLPTKLRSATSRLSQGRGRGSTWAGAPPHPSSPGGTGSFQPQP
QQQQQQQQQQQQQQQQQQSSLDLALEPKGEARRGRGRGVRLRGGGAGRGMRSGRSHEELE
TEESSSSSSNSSSSSSDEEEGQNSGRGLDKENQPQSRREAAKEREEDLSEAANQNGAEED
EEESEQDGETVRRKVKLQNPRTRAQRDPSAIEAISPQAPPSTIHNQSRVLARPPIRNRGP
DPHSSKHARPHTPSGHTDTRERLDDSQKTRPAKLSNGASSSSTPDLPHLRIPLSALQEGG
GEAERENGASGPGCEREVWVSVFRYLSRADLCVCMAVCKNWYKWCLDKRLWARIDLSIKR
TVTPQALTGIIKRQPITLDLSWTNISKKQLNWLVGRLPGLKDLMLAGCSWLSISALCSSG
CPLLRSLDLRYADGVKDSQIRDLVTPPGCDNRSQLRSMQCLRLAGLDISDSTLRLVIRHM
PHLTKLDISHCNNLTDNSINLLTAVGSSTRNTVTELNLGGCSKLSDTCLKYLRRLACISL
LDLRGCNGVSRNACEAFISELSVNMLYFLSDEKLIQRIS
NT seq 3900 nt   +upstreamnt  +downstreamnt
atggcaggcgggcagaagaggggggtcaatgtgtggaagattaacccgtgctattgtgat
gctcgtacagggacgcggcgccgctaccaagacgatggaatctcagacgatgaaattgaa
gggaaaaggatgttcgacctggacgagaagctgcagtgcagcaggtttaactctgaattg
atcaaacacatggagggaaaagatttcacatttgagtacatccagagggaagggctcagg
gagcccattatctttgaggtagccaacggccttggcatacaaatgccagactctgatttc
agtgtgagtgatgtcaagttgtttgtcggaagtcgacgaattgttgacgtgatggatgtg
aacacccagaaaggaatcgagatgtcgatggctcagtggagacgctactatgacacgccg
ccatcagagagagaaaaactctacaacgtcatcagtctggagttcagccacaccaagctg
gagaatctggtcaaacgaccggcttcggtggacctcattgactgggtggacaacatgtgg
cctcgccatctcaaggagagacagagagactccactaacgccatcatagacatgcattat
cccaaagtgcagaagtactgtctcatgagtgtgcagggctgcttcacagatttccacatc
gactttggaggcacttccgtctggtaccacatcctgcgaggaggaaaggtgttctggctg
attccacccacaccccagaacctggagatgtacgagaactgggtgttatcaggaaaacag
ggagacatcttcctcggggacaagtgctttgactgtcagaggatagaactcaagcaagga
aacaccttcataatcccatcagggtggatccatgctgtgtacaccccagaggacacgttg
gtgtttggggggaatttcctccacagctttaacatccccatgcagctcaacatctacagc
atcgaggatcgcacacgggtgccagcaaagttccgctaccctttttactatgagatgtgc
tggtacgtcctggagagatacctctactgtcagaccaacatctcccacctcactcctgag
ttcaaaaaatactccctgggcgtaggactgaccaaggctgacatggaaaacatcgactcc
aacaagaatggcacctcaaatggagtcgacagcgacactgagaacaaggagataaaggaa
gaggcggtcaaagaacaggacgaagaggaagctaaagagactcaagctcaacacctgctg
actccctttgagctggaggggctgtggaacctcttggggaagctggaggggctgccggag
cagaagaagtgcgtccctgtgggcatcctgaaccccgacgccctgctcgatgacgtgaag
actcttctaaaggggcatgtcaatgatgacgccaaactgtcctacactggagagcccatc
gtcaagtggcccaaaaggccttcatggtaccagccccccactccccctccccccgtcatt
taccgtcctcgcttgggcaccaagcccctgaggtccatcaagcgctcctccatctccgcc
ctgcggcgccggcgggtcaggtgtaagcgctgcgccgcctgctgcaggaaagagtgcggc
acctgccagttctgccacgacatgaggaagtttggtggtccggggcgcatgaagaagggc
tgcatcatgagacggtgtctcgcgcccgccttaccgaacacagcgcgatgtgccatatgt
gtagaaggggaatctgacgaatcaaatcccagcactcactccctgatggagtgctctgtg
tgctcgcagatagtccatcgtcaatgcaataaggagcctggtgaagggaaaatcaataaa
gatctacccagctgctgggagtgtcccaaatgttaccatggaaaagactcgggctcagag
tctaccagcgatgaggagagtggagagtcggagggctcaaccgctctgccaccgatcaaa
cgcgcataccgggaaggcatcggcgtaggggcgagacgagggacacggagcagttcctcc
tcccgacccacagctcccccaccgtctcagaagctgctcctgcagcatcaacagaaccga
caaagagcaaatgcactggagctccgactgaagaagaggataaaactagagcgcagcaaa
atcttaacgaagcagtcgtctcaggagcgttccctccgctcgctgtgctccaggttgccg
accaagctgcgctccgccaccagcagactctctcagggccgaggccggggctccacctgg
gccggagcgcctcctcaccccagctctccaggggggacggggtctttccagccgcagccg
cagcaacagcagcagcagcagcagcagcagcagcagcaacagcagcaacagcagtcttcc
ctcgatctggcacttgagcccaagggagaggctcgccgagggagggggagaggggtgagg
ctgcgggggggaggggcggggagaggcatgagaagtggaagaagccatgaagagttggag
acggaggagagcagcagcagcagcagcaacagcagcagctccagcagcgacgaggaagag
gggcagaacagcgggagggggctggataaggagaaccagccacagtcgaggcgagaggca
gccaaagagagagaggaggacctgagcgaggcggccaaccaaaacggagcagaggaggac
gaggaggagagcgagcaggacggtgagacggtgaggagaaaagttaaactccaaaatccc
agaaccagagcccagcgggacccgtcggccatcgaagccatctcccctcaagctccccct
tccacaatacacaaccaaagcagagtcctcgccagaccccccattaggaaccgcggtcct
gatccacactccagtaagcacgcacgcccacacacaccgagcggacacacagacactcga
gagaggctggatgactctcagaaaaccaggccggctaaactgagcaacggcgcctcctct
tcgtcgacccccgatcttccacatctgcgcatccctctgtccgccctgcaggaggggggg
ggcgaggcagagagggagaacggagccagcgggccgggctgcgagagggaggtctgggtc
tctgtcttccgttacttgagtcgagcagatctctgcgtctgcatggccgtctgcaagaac
tggtacaaatggtgtttagacaagcggctatgggcccggatcgacctgagcatcaaacgc
accgtgactcctcaggctctgacgggcatcataaagagacagccaatcacactcgatctc
tcttggaccaacatctctaaaaaacagctcaactggctcgttggccgacttcctgggctg
aaggatctgatgctggccgggtgttcatggttatctatttccgctctctgctcgtctggg
tgccctctcctccgctctcttgacctgcggtatgcagacggagtcaaagactctcagatc
agggacctagtcacccctccaggttgtgacaatcgcagtcagttgcgcagcatgcagtgt
ctgcgtctagccggcctggacatcagcgactccaccctgcgcctggtgatccgccacatg
ccacatttaacaaaactggacatctcccactgcaacaacctcacggacaactccatcaac
ctgctgactgcagtgggctcctccacccggaacaccgtcacagaactcaacctgggaggt
tgcagtaaactgtcagatacgtgtctaaagtacctccgccgcctcgcctgcatctcgctg
ctcgacctgcgaggctgtaacggcgtctcccgaaacgcctgtgaggccttcatctccgag
ctgtcagtcaacatgctctacttcctatcagatgagaaactgatccagaggatatcctag

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (56)   
   KEGG ORTHOLOGY (1)   
   RefGene (52)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (11)   
   Pfam (11)   
All databases (86)   

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