KEGG   Notothenia coriiceps (black rockcod): 104963735
Entry
104963735         CDS       T04920                                 
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
  KO
K12614  ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
Organism
ncc  Notothenia coriiceps (black rockcod)
Pathway
ncc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ncc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104963735
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ncc03019]
    104963735
   03036 Chromosome and associated proteins [BR:ncc03036]
    104963735
Enzymes [BR:ncc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     104963735
Messenger RNA biogenesis [BR:ncc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     104963735
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     104963735
Chromosome and associated proteins [BR:ncc03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    104963735
SSDB
Motif
Pfam: DEAD Helicase_C CMS1
Other DBs
NCBI-GeneID: 104963735
NCBI-ProteinID: XP_010790679
UniProt: A0A6I9PI98
Position
Unknown
AA seq 489 aa
MATARTENSGPVIMGLNKQNGQLRGQTKPAPVQPAPTTQGKAPAAPQTEGGAAQDGGGIK
FGDDWKKSLKLPPRDDRVRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDYIQALVMVPTRELALQVSQISIQI
SKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVMDE
ADKLLSQDFVVLIEDIISFLAKHRQILLYSATFPISVQKFMSKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPSSIDKSLYVAEFHTSGGDCDVEEIEE
KPGRQQDGK
NT seq 1470 nt   +upstreamnt  +downstreamnt
atggcaacggccagaacagaaaactctggccccgtcatcatgggactgaacaagcagaac
gggcagctcagaggacagaccaaaccagctccagtccagccagcacccacaactcaagga
aaggctccggctgcaccccagacagagggcggtgccgctcaggacggaggaggcatcaag
ttcggagacgactggaagaagagcctaaagctccctcccagagacgacagagtcagaacc
tctgatgtcacgtctactaaggggaatgagtttgaagattactgtctcaaaagagaactc
ctgatgggtatctttgagatgggttgggagaaaccttcccctatccaggaggagagcatt
cccatcgccctgtctggacgggatattctggctcgggctaagaatggaacgggaaaaagt
ggagcctatctcatcccaatgctggagagaatagacctgaagaaggactacatacaggca
cttgtcatggtgcccacccgggagctggcactgcaggtgagccagatctccatccagatc
agcaagcacctggggggggtcaaagtcatggcaaccacagggggcaccaacctgcgagat
gacatcatgcgtctggatgagaccgtgcatgtggtcattgccacgcctggtaggatcctg
gacttgataaagaaaggagttgcaaaagtggatagagtccagatgatggtgatggatgag
gcggataagctgctgtctcaggactttgtggtgctcattgaggatatcatcagcttcctg
gccaagcacaggcagatcctgctctactctgcaaccttccccatcagcgtgcagaagttc
atgtccaagcaccttcagaaaccctacgagataaacctgatggaggaactgactctgaag
ggcatcactcagtactacgcctacgtcacggagaggcagaaagtccactgtctcaacacg
ctgttctccaggcttcagatcaaccagtcgatcatcttctgtaactccactcagagggtg
gagctgttggccaagaagatcactcagctgggatactcctgcttctacatccatgccaag
atgatgcaggaatacagaaaccgtgtgttccacgacttcagaaatggactctgcagaaac
ctggtctgcactgatctgttcaccaggggcattgacatccaggctgtcaatgtggtaatc
aacttcgacttccccaagaacgctgagacgtacctccatcgcattggaagatcagggagg
tttggtcacctgggcctggccatcaacctgatcacatcagaggaccgcttcaacctgaag
tcaatcgaggaccagttggtgaccgacatcaagcccatccccagcagcatcgacaagagc
ctctacgtggccgagttccacacttccggaggagactgcgacgtggaggagatcgaggag
aaaccaggacgccaacaggacggcaaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (27)   

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