KEGG   Notothenia coriiceps (black rockcod): 104966775
Entry
104966775         CDS       T04920                                 
Symbol
hmgb1
Name
(RefSeq) high mobility group protein B1
  KO
K10802  high mobility group protein B1
Organism
ncc  Notothenia coriiceps (black rockcod)
Pathway
ncc03410  Base excision repair
ncc04140  Autophagy - animal
ncc04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:ncc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    104966775 (hmgb1)
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    104966775 (hmgb1)
  09143 Cell growth and death
   04217 Necroptosis
    104966775 (hmgb1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ncc03036]
    104966775 (hmgb1)
   03400 DNA repair and recombination proteins [BR:ncc03400]
    104966775 (hmgb1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ncc04147]
    104966775 (hmgb1)
Chromosome and associated proteins [BR:ncc03036]
 Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    104966775 (hmgb1)
DNA repair and recombination proteins [BR:ncc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     104966775 (hmgb1)
   MMR (mismatch excision repair)
    Other MMR factors
     104966775 (hmgb1)
Exosome [BR:ncc04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   104966775 (hmgb1)
SSDB
Motif
Pfam: HMG_box_2 HMG_box HMG_box_5 Ribosomal_60s NOA36
Other DBs
NCBI-GeneID: 104966775
NCBI-ProteinID: XP_010794363
UniProt: A0A6I9Q255
Position
Unknown
AA seq 200 aa
MVKVLGKPKGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSQKEKGKFE
DLAKLDKVRYERDMQNYDPPAGQRKKRFKDPNAPKRPPSAFFLFCGDFRAKIKSEHPGLT
IGDTAKKLGEMWNTSSAENKQPYERKGAKLKEKYDKDVLAYRTKGTVEAAAPPAAAAAAD
DDDDDDDEDEEEDDDDDDDE
NT seq 603 nt   +upstreamnt  +downstreamnt
atggtgaaggttttgggaaagccgaaaggcaaaatgtcctcatatgcctactttgtacaa
acatgccgagaggagcataagaagaaacatcctgaagcctctgtcaacttctctgagttc
tcaaagaaatgctctgagcgatggaagacaatgtcacagaaagagaagggcaagtttgaa
gatttagccaaactagacaaggtgcgttatgagagggacatgcagaattacgatccccca
gccggccagaggaagaagcgattcaaggaccccaatgcccccaagagaccaccgtctgca
ttcttcctgttctgcggtgactttcgcgcaaagataaaaagcgagcaccctggacttact
attggggacactgcaaagaagttgggagagatgtggaacacctcctctgcagagaacaaa
cagccatacgagaggaagggagccaagttgaaggagaagtatgacaaggatgtccttgca
taccgcacaaagggcacagttgaggccgcagcacctcctgcagcagcagcggcagcggac
gacgacgatgatgatgatgacgaagatgaagaggaagatgatgatgatgacgatgatgag
tag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (28)   

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