KEGG   Candidatus Nitrosomarinus catalina: NMSP_0928
Entry
NMSP_0928         CDS       T04846                                 
Symbol
rpoK
Name
(GenBank) DNA-directed RNA polymerase subunit K
  KO
K03014  DNA-directed RNA polymerases I, II, and III subunit RPABC2
Organism
nct  Candidatus Nitrosomarinus catalina
Pathway
nct03020  RNA polymerase
nct03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:nct00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    NMSP_0928 (rpoK)
  09124 Replication and repair
   03420 Nucleotide excision repair
    NMSP_0928 (rpoK)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nct03021]
    NMSP_0928 (rpoK)
   03400 DNA repair and recombination proteins [BR:nct03400]
    NMSP_0928 (rpoK)
Transcription machinery [BR:nct03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     NMSP_0928 (rpoK)
  RNA polymerase III system
   RNA polymerase III
     NMSP_0928 (rpoK)
  RNA polymerase I system
   RNA polymerase I
     NMSP_0928 (rpoK)
DNA repair and recombination proteins [BR:nct03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      NMSP_0928 (rpoK)
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-ProteinID: ARS64547
UniProt: A0A2Z2HKL4
Position
735008..735538
AA seq 176 aa
MIRLYNVLREFLYLSSAEEPKVITPESETLETEADPNLGLNKALDTYRKLIEKNTDNPTE
PLTDKEQSNLENRIKEIEEREVVEKIEDHDPVEIPCEKGKITIGPPTLTRFEQARIMGAR
ALQLSLGAPPFIEIPKNARISLDISMEELEKKVIPITIRRVLPNGDYQNIPIDYFI
NT seq 531 nt   +upstreamnt  +downstreamnt
atgattagattatataacgttttaagagaatttttgtacttgtccagtgctgaagaacca
aaagtaattacaccagaatctgaaacattagaaacagaagcagatcccaatttaggatta
aacaaagcattagacacttatcgaaaattaattgaaaaaaatacagacaatccaacagaa
ccattaacagataaagaacaatcaaatcttgaaaatagaattaaagaaatcgaagaaaga
gaagttgtagaaaaaattgaagatcatgatccagttgaaattccttgtgaaaagggcaaa
atcactattggacctccaacattaacaagatttgagcaagccagaatcatgggagcaaga
gcattacaattatcattaggagcaccaccatttatcgaaattccaaaaaatgcaagaatt
tctttagatatttcaatggaagaattagaaaagaaagtaattccaattaccattagaaga
gttttgccaaatggcgattatcaaaacatcccaattgattatttcatataa

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