KEGG   Candidatus Nitrosocaldus cavascurensis: NCAV_0360
Entry
NCAV_0360         CDS       T05329                                 
Symbol
rrp
Name
(GenBank) Exosome complex component Rrp41
  KO
K11600  exosome complex component RRP41
Organism
ncv  Candidatus Nitrosocaldus cavascurensis
Pathway
ncv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ncv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NCAV_0360 (rrp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ncv03019]
    NCAV_0360 (rrp)
Messenger RNA biogenesis [BR:ncv03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     NCAV_0360 (rrp)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     NCAV_0360 (rrp)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-ProteinID: SPC33554
UniProt: A0A2K5API6
Position
NCAV:complement(323398..324147)
AA seq 249 aa
MSKLMSEEGIRIDGRRWNELRPVKIEVGVLKNADGSSYIEFGKNKIVVAVYGPKEVHPKH
MALPDRSVLRCRYHMLPFSVEERKNPAPSRREIEISKITREALEPALILEDYPRTVIDVF
IEVLQSDGGSRCAGITAASVALADAGINMRDLVAACAAGKVGGRIVLDINDEEDKMGEAD
MPVAYLPNLKQISLLQLDGKLTADEYRECLNLAISGCMQVYNMQREALMKKYFSTADNGG
GEDDEEEGE
NT seq 750 nt   +upstreamnt  +downstreamnt
atgagcaagttgatgagtgaagaaggtataaggatagatgggaggagatggaatgagcta
aggccagtgaagatagaggttggtgtactcaagaatgcagatggctcatcctatatagag
tttgggaagaacaagatcgtagttgctgtttatgggcccaaagaggtgcatccaaagcat
atggcacttccagatcgaagtgtgctgaggtgcaggtatcatatgctcccattctctgtt
gaggagaggaagaaccctgcaccatcgaggagggagatagagatatcgaagataaccagg
gaagcacttgagccagcactgatccttgaggattatcctagaactgttatagatgtgttc
atagaagtgctccagtcagatggaggatcaaggtgtgctgggataactgctgcatctgta
gcgcttgctgatgctggtataaatatgcgtgaccttgttgctgcatgtgctgctggcaag
gttggagggaggatagtgctagatataaatgatgaggaggataagatgggcgaagcggat
atgcctgtagcatatctaccaaacctaaagcagatctcactgctacagttggatggcaag
ttgacagcagatgagtatagagaatgccttaacctagctataagtgggtgtatgcaggta
tataacatgcagagggaagcactgatgaagaagtacttcagcacagcagataatggagga
ggagaggatgatgaggaagagggagagtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (26)   

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