KEGG   Nitrospira defluvii: NIDE0362
Entry
NIDE0362          CDS       T01281                                 
Symbol
gidA
Name
(GenBank) tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
  KO
K03495  tRNA uridine 5-carboxymethylaminomethyl modification enzyme
Organism
nde  Nitrospira defluvii
Brite
KEGG Orthology (KO) [BR:nde00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:nde03016]
    NIDE0362 (gidA)
   03036 Chromosome and associated proteins [BR:nde03036]
    NIDE0362 (gidA)
Transfer RNA biogenesis [BR:nde03016]
 Eukaryotic type
  tRNA modification factors
   Other tRNA modification factors
    NIDE0362 (gidA)
 Prokaryotic type
    NIDE0362 (gidA)
Chromosome and associated proteins [BR:nde03036]
 Prokaryotic type
  Chromosome partitioning proteins
   Other chromosome partitioning proteins
    NIDE0362 (gidA)
SSDB
Motif
Pfam: GIDA GIDA_C GIDA_C_1st FAD_oxidored FAD_binding_2 AlaDh_PNT_C Pyr_redox_2 DAO Lycopene_cycl Pyr_redox ThiF Pyr_redox_3 HI0933_like FAD_binding_3 NAD_binding_9
Other DBs
NCBI-ProteinID: CBK40141
UniProt: D8PA82
Position
326604..328478
AA seq 624 aa
MSEQCDVIVVGGGHAGCEAALAAARMGARTILLTMDPDRIAQMSCNPAIGGIAKGHLVKE
IDALGGEMGRNTDQAGIQFRMINTSKGPAVRALRAQCDKKVYREVMQRTLRAQPALEIRG
GTVDRILTRAGGVTGIVTDAGVSIHARAVVLTSGTFLKGLIHIGLNHFPAGRAGEASAEH
LSDCMRDFGFEVGRLKTGTPPRLDRDSIDFSVMEVQPGDDPPPPFSYRTRRVSLPQVPCH
LTYTNSQTHDIIAKNIDRSPLFSGVIDSIGPRYCPSIEDKVVRFADKDRHQIFIEPEGLD
TNEFYPNGISTSLPVDVQAAILKTIPGLEQTRMLKPGYAVEYDYFPPRQLHNSLETKLVA
GLYHAGQINGTSGYEEAGAQGIMAGINAALKLRGEAPLVLDRSQAYIGVLIDDLITKDAR
EPYRMFTSRAEYRLLLRHDNADLRLMDLGHRIGLVSDEMHGKLEAKRFAIEREVQRLKET
RPKITSDVKRLMEEAEVGAVGPTQSLAEILRRQEMSYNKIVAVFGGADIDDPDITEAIQL
EVKYEGYIKRQLQQIQRSEKLEHRAIPDQFDYDGITGFSSEVREKLKRVKPASVGQASRI
SGVTPAAISLLLVAIERHRRQPSA
NT seq 1875 nt   +upstreamnt  +downstreamnt
gtgagtgaacagtgtgacgtcatcgtcgtcgggggtggccatgccgggtgtgaagcggcg
ctggccgcagcccgcatgggggcgcgtacgatcctgctcacgatggatcctgaccggatc
gctcagatgtcctgcaatcctgcgatcggcggcattgccaagggacatctcgtcaaggag
atcgatgcgttgggcggagaaatggggcggaataccgaccaggccggcatccagtttcgc
atgatcaacaccagcaagggtcctgcggtccgtgccttgcgcgcgcaatgcgataaaaag
gtctatcgcgaagtcatgcagcgcacgctccgtgcgcagccggcacttgagatcaggggc
gggacggttgatcgcattctcaccagagcgggcggcgtcaccgggattgtgacggatgcc
ggcgtatctattcatgcgcgggcagtggtgctcacctcgggcacgttcctgaagggattg
atccatattggtctcaatcattttcccgccggtcgagccggggaggcctccgcggagcac
ctgtccgattgcatgcgtgattttggctttgaggttggccggttgaagactggaactccg
ccccgactcgaccgggattctatcgatttttctgtgatggaggtgcagccgggagacgat
cctccaccgccgttttcttaccggacacggcgtgtgtccttgccacaggtgccctgccac
ttgacgtacacgaattctcaaacgcatgatattattgcgaaaaatattgatagatcgccc
ttgttcagcggggtgattgattctatcggtccccggtattgcccctcgatcgaggataag
gtcgtgagatttgccgataaagaccggcatcaaatcttcattgagccggaagggttggat
acgaacgaattttacccgaatggaatttcaaccagtctcccggtcgatgtgcaggcagcc
atcctgaagaccattcccgggcttgagcagacgagaatgctgaagcctgggtatgcggtc
gagtacgattattttcctccccgccaacttcacaattcgctcgagacgaaattggttgcc
gggctctaccatgccggccaaatcaacgggacttccggatatgaagaggccggtgcccag
ggaatcatggccggaataaatgccgccctgaagctgcggggtgaagcgccgctcgtgctg
gatcggtcgcaggcctatattggcgtgttaattgatgatttaatcacgaaagatgccagg
gaaccctaccgcatgttcacttcgcgtgcggaataccgactattgctccgccatgacaat
gccgatcttcgcttaatggatctcggacaccgcatcgggttggtatctgatgagatgcac
gggaagctggaggcaaagcggtttgccattgaacgggaagttcagcgtcttaaggaaacc
aggccgaaaataacgtctgatgtgaagcggctcatggaggaggcggaggtaggagctgtg
gggccaacccaatctttggctgaaatcctccggcgtcaggaaatgagctacaacaagatc
gtcgcagtgttcggtggcgctgatattgatgatcctgacatcaccgaagcgattcagctc
gaagtgaaatacgaaggctatattaagcggcagctgcagcaaattcagcgatcagagaag
ttagagcaccgcgccatccccgatcagtttgattatgacggaatcaccggtttttcgagc
gaagtcagggaaaaacttaagcgggtgaagccggcatcggtagggcaggcttcgcgtatt
tccggtgtaacacctgcagctatttcccttttgctggttgcaatcgagagacatcgtcgg
caaccatcggcatga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (15)   
   Pfam (15)   
All databases (60)   

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