KEGG   Nitrospira defluvii: NIDE1238
Entry
NIDE1238          CDS       T01281                                 
Name
(GenBank) Squalene synthase
  KO
K00801  farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21]
Organism
nde  Nitrospira defluvii
Pathway
nde00100  Steroid biosynthesis
nde00909  Sesquiterpenoid and triterpenoid biosynthesis
nde01100  Metabolic pathways
nde01110  Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:nde00001]
 09100 Metabolism
  09103 Lipid metabolism
   00100 Steroid biosynthesis
    NIDE1238
  09109 Metabolism of terpenoids and polyketides
   00909 Sesquiterpenoid and triterpenoid biosynthesis
    NIDE1238
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01006 Prenyltransferases [BR:nde01006]
    NIDE1238
Enzymes [BR:nde01000]
 2. Transferases
  2.5  Transferring alkyl or aryl groups, other than methyl groups
   2.5.1  Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
    2.5.1.21  squalene synthase
     NIDE1238
Prenyltransferases [BR:nde01006]
 Terpene biosynthesis
  Squalene/phytoene synthase
   NIDE1238
SSDB
Motif
Pfam: SQS_PSY
Other DBs
NCBI-ProteinID: CBK40994
UniProt: D8PCN5
Position
1206540..1207499
AA seq 319 aa
MLPATVRDQMGLAYLFARAADTIADTDLIDREQRLRYLTQFRMQFSSSAGARSDLHAIQA
ALIPHQADSAERVLLQRLEDCLTLYDQFDPADQERIRWLMGVLPDGMAMDLSHFQGDSAQ
NLTAFQTLDELDQYTYYVAGCVGEFWTRMVCAHCPSMSDWDVTKMSAIGVRFGKGLQLTN
IVKDLARDLHRGRCYVPEPLLREAGLTPVDLLNRESLPKFRPVLMRLIKMAIEHLDQGWM
YTMALPRLEIRQRLACMWPILLAGETLKRVAAAPDLLDPSVNVKAPRSVVYRVMAMTTLT
GGCGYVGTAYWGRLRKQIV
NT seq 960 nt   +upstreamnt  +downstreamnt
gtgctgccggcgacggtgcgcgaccagatgggcttggcctacctgtttgcgcgtgccgcc
gacacgattgccgataccgatctgatcgaccgcgagcagcgactccgctatctcacccag
tttcgaatgcagttcagttccagcgctggggcgcggagtgacctgcacgcgattcaagcc
gccttgattcctcatcaagccgactccgcagagcgagtgttgctccagcggctggaagac
tgtttgacgctgtacgatcaattcgatccagccgaccaagaacggattcggtggttgatg
ggggtgttgccggacgggatggcgatggatctttcgcattttcagggcgattcggctcag
aatctaacggcgtttcagaccctggacgaattggatcagtacacgtactacgtcgccggt
tgtgtcggtgaattctggacccgaatggtctgcgcgcactgcccgtcgatgtcggattgg
gatgtgacgaaaatgtcggccatcggggtacgattcggcaagggattgcagctgacgaat
atcgtgaaggatctggcccgggatctccatcgtgggcggtgttatgtgcctgagccgctt
ctccgtgaggcgggcctgacgccggttgatttgctgaatcgagagagcctgccgaagttc
aggccggtattgatgcggttgatcaaaatggccatcgaacacttggatcagggctggatg
tacaccatggccttgcctcgccttgaaattcgtcagcgattggcatgtatgtggccgatt
ctgttggcgggtgaaacgctgaaacgtgtggcggctgcgcctgatctcctcgacccgtcg
gtcaacgtcaaagcgccgcgctccgtcgtctatcgcgtcatggcgatgaccaccttgacg
ggcggttgcggatacgtagggacggcctactgggggcgcttgcggaagcagatcgtctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (6)   
   KEGG PATHWAY (4)   
   KEGG MODULE (2)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (4)   
   KEGG ENZYME (1)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (38)   

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