KEGG   Naumovozyma dairenensis: NDAI_0G05850
Entry
NDAI_0G05850      CDS       T02234                                 
Symbol
NDAI0G05850
Name
(RefSeq) hypothetical protein
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
ndi  Naumovozyma dairenensis
Pathway
ndi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ndi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NDAI_0G05850 (NDAI0G05850)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ndi03019]
    NDAI_0G05850 (NDAI0G05850)
   03041 Spliceosome [BR:ndi03041]
    NDAI_0G05850 (NDAI0G05850)
   03009 Ribosome biogenesis [BR:ndi03009]
    NDAI_0G05850 (NDAI0G05850)
   03016 Transfer RNA biogenesis [BR:ndi03016]
    NDAI_0G05850 (NDAI0G05850)
Enzymes [BR:ndi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     NDAI_0G05850 (NDAI0G05850)
Messenger RNA biogenesis [BR:ndi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     NDAI_0G05850 (NDAI0G05850)
Spliceosome [BR:ndi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    NDAI_0G05850 (NDAI0G05850)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    NDAI_0G05850 (NDAI0G05850)
Ribosome biogenesis [BR:ndi03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    NDAI_0G05850 (NDAI0G05850)
Transfer RNA biogenesis [BR:ndi03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    NDAI_0G05850 (NDAI0G05850)
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk Helicase_C nSTAND3 Death_3 HTH_Tnp_ISL3 AAA_22 Helicase_dom4_arc
Other DBs
NCBI-GeneID: 13927036
NCBI-ProteinID: XP_003980244
UniProt: J7SB57
Position
7:1450221..1453484
AA seq 1087 aa
MDSDDLFGVFNEAPIEIPDDIPEEEGQSSTTPNEDNKTNKRTLDSDEDVNVDDDDDEEEG
NNKNVSNKTKKSKIHSLTDKKEKSTVVPVVADSFEQEASREVEASAGLTNAATTQVEEDG
KVRLSHQVRHQVALPPNYDYTPIAEHKRINEARTYPFTLDPFQDTAVSCIDRGESVLVSA
HTSAGKTVVAEYAIAQSLREKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPD
AGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVF
LSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREE
NFQKAMASISNQSGDDPNSTNSRGKKGQTFKGGAAKGDAKGDIYKIVKMIWKKKYNPVIV
FSFSKRDCEELALKMSKLDFNSDDEKDALSKIFNNAIALLPETDRELPQIKHILPLLRRG
IGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRW
VSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMIL
NLMRVEGISPEFMLEHSFYQFQNVISVPIMEKKLIELNKEIDDIQIDDEENIKEYYEVRQ
TLDSYNEDVRHIMTHPANVLSFLQPGRLIEVNIGGKTGDNKQNYGWAAVIDFAKRINKRN
PTAVYTDHESYIVNVVVNSMYADSPVNLLKPFNPTFPEGIRPAEEGEKSICAAIPITLDS
IQSLGNIRLHMPKDIRASGQKEIVGKSLSEVQRRFPDGIPLIDPIKNMKIEDDDFTKLLK
KIEVLEGKLFSNQLSNSVRLAELYEKYSRKHALINDTKQLKHKINESQAVIQLDDLRRRK
RVLRRLGFSTPSDIIELKGRVACEISSGDELLLTELIFNGNFNELTPEQSAALLSCFAFQ
ERCKEAPRLKPELGEPLKAMRELASKIAKIMKDSKIEIVEKDYVESFRHELMEVVYEWCK
GATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNTALKEKMETVIKLIHRDIV
SAGSLYL
NT seq 3264 nt   +upstreamnt  +downstreamnt
atggattctgacgatttatttggtgtcttcaatgaagctcctattgaaatacctgatgat
attccagaagaagaagggcaaagtagtaccactccaaatgaagacaacaaaacaaacaag
cgtactttagattctgacgaagatgtaaatgttgatgatgacgacgatgaagaagaaggg
aataacaagaacgtatcgaacaagacaaagaaatctaaaatccattctttaacagacaag
aaagaaaaatccacagtagtccccgtcgtagctgattccttcgaacaagaagcttccaga
gaggtcgaagcatcagcaggtttaacaaatgctgcaaccacacaagtagaagaagatggt
aaagttagattatcacatcaagttcgtcatcaagtcgccttaccaccaaattacgattat
accccgattgctgaacataagagaattaatgaagcacgtacgtatccgttcactttggat
cccttccaagatacagctgtttcttgtatcgatagaggtgaatctgttttagtgtcagct
catacttctgcagggaaaactgtggtcgctgagtatgctattgctcaatctttaagagaa
aagcaaagagtcatttatacttctccaattaaagctttatctaatcaaaaatatagagaa
ttgctagctgagtttggtgatgttgggttgatgactggtgatattacaattaaccctgat
gcaggttgtttagttatgactacagaaattttaagaagtatgttatatagaggtagtgaa
gtgatgagagaagttgcatgggttatatttgatgaagttcattatatgagagataaagaa
cgtggtgttgtttgggaagaaactatcattcttttacctgataaagtccgttatgtgttt
ttatctgctactattccaaatgctatggagtttgcggaatggatttgtaagattcactct
caaccttgtcatattgtttatactaatttccgtccaactcctttacaacattatcttttc
ccagcacatggtgatggtatttatttagttgttgatgaaaaaagtacatttagagaagaa
aatttccaaaaagcgatggcatcaattagtaatcaatcaggtgatgatccaaattctaca
aattcaagaggtaagaagggtcaaacgtttaaaggtggtgctgccaaaggtgatgctaag
ggtgatatttataagattgttaagatgatttggaagaaaaaatataaccctgttattgtc
ttttcatttagtaaacgtgattgtgaagaattagcattgaaaatgtctaaattagatttc
aattcagatgatgaaaaggatgccctatcgaaaatttttaataatgcaattgctttgtta
ccagaaactgatagagaattacctcaaattaaacatattttacctctattaagaagaggt
attggtatccatcattcaggtcttttaccgatcttaaaagaagttattgaaattttattc
caagaagggttcttaaaggttttatttgcaacagaaactttctctattgggttaaatatg
cctgcaaagactgttgttttcacttcagttagaaaatgggatggtcaacaattccgttgg
gtatctggtggtgaatatattcaaatgtcaggtcgtgctggtcgtcgtgggttagatgat
cgtggtattgtcattatgatgatcgatgagaaaatggaaccacaagttgctaaaggtatg
gttaaaggtcaagctgatagattggattctgctttccatttaggttataatatgattttg
aatttaatgagagtggaaggtatttcacctgagtttatgttagaacattcattttatcaa
ttccaaaatgtaatttccgtccccattatggaaaaaaaattaattgaattgaataaagaa
attgatgatattcaaattgatgacgaagaaaatatcaaagaatattatgaagtaaggcaa
acgcttgatagctacaatgaagatgtccgtcatataatgacacatccagccaatgtatta
agctttttacaaccaggtagactaattgaagttaacattggaggtaagactggggataac
aagcaaaattatggttgggcagcagttattgattttgctaagagaattaataaacgtaat
cctactgctgtctatacagaccatgaatcatacattgttaacgttgtagttaatagtatg
tatgctgattctccagtgaatttgttgaagccatttaatccaacattccctgaaggtatt
cgtcctgctgaagaaggtgaaaaatccatatgtgctgctataccaataactttagattct
atacaatcattgggtaatattagactacatatgcccaaggatatcagagctagtggacaa
aaggaaattgtaggtaaatcattgagtgaagttcaacgtagattccccgatgggatccca
ttaattgatccaattaaaaacatgaagattgaagatgatgattttactaaattattgaaa
aaaattgaagttcttgaaggtaaattattttcaaatcaattaagtaattctgtgagatta
gctgaattatatgagaaatatagtaggaagcatgcgttgattaatgatactaaacaatta
aaacataagattaatgaatctcaagctgtgatacagttagatgatttacgtagacgtaag
agagttttacgtcgtttaggattttctacgccaagtgatattattgaattgaaaggtaga
gttgcatgtgaaatttctagtggtgatgaattattattaactgaattaatcttcaatggt
aatttcaatgaattgacacctgaacaatcagcagcattactttcatgtttcgcattccaa
gaacgttgtaaagaagccccaagattaaaacctgaattaggtgaaccattgaaagctatg
agagaacttgcttctaaaattgccaaaataatgaaggattccaagattgaaattgttgag
aaggattatgttgaaagttttagacatgaacttatggaagttgtgtatgaatggtgtaaa
ggtgccacatttacccaaatttgtaaaatgaccgatgtttatgaaggttcattgattaga
atgttcaagagattggaagaattagttaaagaattggttgatgttgccaatacaattggt
aatacagctttgaaggaaaaaatggaaacagttataaagttgatacatagagatattgtt
tccgctggttccttgtatttatag

  All links  
Ontology (6)   
   KEGG BRITE (6)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (26)   

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