KEGG   Nonlabens dokdonensis: DDD_2846
Entry
DDD_2846          CDS       T02441                                 
Name
(GenBank) ATP-dependent dead/H DNA helicase
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
ndo  Nonlabens dokdonensis
Pathway
ndo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ndo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DDD_2846
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ndo03019]
    DDD_2846
   03400 DNA repair and recombination proteins [BR:ndo03400]
    DDD_2846
Enzymes [BR:ndo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     DDD_2846
Messenger RNA biogenesis [BR:ndo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     DDD_2846
DNA repair and recombination proteins [BR:ndo03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      DDD_2846
SSDB
Motif
Pfam: DEAD Helicase_C RecQ_Zn_bind HTH_11 HTH_7 TrmB
Other DBs
NCBI-ProteinID: AGC77973
UniProt: L7WGC4
Position
complement(3082197..3084083)
AA seq 628 aa
MIENSLHILKNRFGYESFRPLQQEIIANVLEGKDSLALLPTGGGKSICYQIPGIQLNGIC
IVISPLVALIKDQIDQLKKRGIKAAGITGGISYRELDDILDNCIYGNYDFLYLSPERLKQ
DLVQERILKMNVNLIAVDEAHCISEWGHDFRPAYREINALRELHPRVPVIAVTATATKEV
QADIVTVLELEQPQVFKSSYERSNIHYQILHTADKRQALKEFYALHSGSSITYVRSRKNA
VEYSLLLQQQGITSGFYHGGLSNKLRSKTSTAWLKNETQVIVATNAFGMGIDKPDVRSIV
HLQLPDSIESYYQETGRAGRDGTLSTAQFIYNRNDIQHAYNQFVKSQPTVDYLKFIYRKL
SNFLRIALGEGENLTQPLSFSQFCKTYELNGMQAYSALNALDRFSVIHLAQGFHRRCSIR
FRESGTNIINFVRNRPEVNAIIQSILRTYGSSKNQTLQINPSLIATRSNTNEDLVFETIE
LLKNQDFIDATIAHTDLQITYLTPRDDDRTINRFSKELEKQNQIRLAKLKSVIQLVTNTE
DCINRMILTYFDEELKENCNHCSNCVTKQKGENVQNEVLALIQKKPVSAQEILSRSKLAR
ETVIKAIKELLENKTIILTDNNKYTLHE
NT seq 1887 nt   +upstreamnt  +downstreamnt
ttgatcgagaattcgttacatatactcaaaaatcggttcggttatgaatcttttagacct
ttacagcaagaaataatagcaaacgttctagaaggaaaagattcacttgctttattgcct
accggtggaggaaaatctatatgttatcaaataccaggtattcaactaaacggaatttgt
atcgtcatctcgcctttagtagcacttataaaagatcaaatcgatcaacttaagaaaaga
ggtatcaaagctgctggtattaccggtggaatttcttacagagaactcgatgacattctt
gacaattgtatttatggaaattatgattttttatacctcagtccagaacgactgaaacaa
gaccttgttcaagaacgtatacttaaaatgaacgtcaacctcattgctgtagatgaggca
cattgcatcagtgaatggggacacgactttagaccagcttatcgtgagattaatgctttg
agagaattgcatcctcgagtaccggtaattgcggtgacagccacagcaacaaaagaagtt
caagcagatattgttactgtgttagagctggaacaaccacaagtttttaagtccagttat
gaaagatcaaatattcattatcagattcttcatactgcagataagcgacaagcactcaaa
gagttttatgcgctacattctggctccagcataacttatgtacgaagtagaaaaaacgct
gtggaatacagtttactcttacaacaacaaggtattacttctggattctatcatggtggt
ctttctaataaattgcgctcaaaaacctctactgcatggctcaaaaatgaaactcaagtc
atcgtggctacaaatgccttcgggatgggaatcgataagccagacgtgcgcagtattgtt
cacttgcagctgcctgatagtatagaaagctattatcaagaaactggaagagctggccgt
gatggcacgcttagcacagctcaattcatttataatcgcaacgacatccagcatgcctat
aatcaatttgtaaaatcacaacctactgttgattatctcaaatttatttatagaaagtta
tctaattttctgagaatcgctttgggcgaaggcgagaacttaacacagcccttatccttt
tctcaattctgtaaaacttatgagctcaatggaatgcaggcatacagcgccttaaatgcc
ttagaccgctttagtgtcatccatcttgcacaaggtttccatagacgttgtagtatccgc
tttcgcgaaagcggaacaaacatcataaactttgtaagaaaccgtcctgaagttaatgcc
atcattcaatctatattaaggacttacggaagtagtaaaaaccaaacattacaaattaat
ccatcacttattgctacgagaagtaatactaatgaggacttagtgtttgaaactatagag
cttttgaaaaaccaagattttatagacgcgaccattgctcataccgatttacaaattact
tatttaacgcctagggatgatgaccgcaccattaataggttttcaaaagaattagaaaag
caaaatcaaatacggctggcaaaattaaaatctgtgatacaattagtgactaatactgaa
gactgtatcaatagaatgattttaacttattttgatgaagaacttaaagaaaattgcaat
cattgcagtaattgcgtgactaagcaaaaaggtgaaaatgtacaaaatgaagttttggca
ttgattcaaaaaaagccagtgagtgctcaagaaattttgagccgcagcaaattagctcgt
gaaacggtcataaaagcaattaaagaactattagaaaacaaaactattatcctaaccgat
aataataaatacaccttacatgaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (37)   

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