KEGG   Nothobranchius furzeri (turquoise killifish): 107375336
Entry
107375336         CDS       T05163                                 
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
nfu  Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nfu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107375336 (exosc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nfu03019]
    107375336 (exosc1)
Messenger RNA biogenesis [BR:nfu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     107375336 (exosc1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     107375336 (exosc1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 107375336
NCBI-ProteinID: XP_015799286
UniProt: A0A1A8AFJ2
Position
sgr02:complement(88220634..88227181)
AA seq 204 aa
MSSQATLVENMSPMKLCVPGDKLCSEGDCNPGAGVYLRHGYIYSSLAGFVLKTTEGEKLP
VISVVRETEAQLLPDVGAIVTCKVTSTNPRFAKVHILYVGSTPLKDRFRGTIRKEDVRAT
EKDKVEIYKSFRTGDIVLAKVISLGDIQSNYLLTTAENELGVVVAHSEAGAQMIPISWCE
MQCPLTHAKEFRKVARVQPEYLEA
NT seq 615 nt   +upstreamnt  +downstreamnt
atgagctcgcaagctactcttgtcgaaaacatgtcgcccatgaagttgtgtgttccaggt
gacaagctttgcagtgagggagactgtaatccaggcgcaggagtatatctgcggcatggc
tacatttactcctcactcgcaggctttgtgctcaagacaaccgaaggcgagaagttacca
gtgatctcagtggtgagagaaacagaagctcaactacttccagatgtaggagccattgtc
acctgtaaggtgaccagcaccaaccccaggtttgccaaagtccacatcctgtatgtgggt
tccacaccgctgaaggaccgcttcagagggaccatcaggaaagaagacgtgcgagcaaca
gagaaggataaagtggagatatacaaaagcttcagaacgggcgacattgttttggctaaa
gtgatttctctcggtgacattcagtctaactacttgttaacaacagctgagaatgaactg
ggtgtggtggtggcccacagcgaggcaggagcccagatgattcccatcagctggtgcgag
atgcagtgtccgttgactcacgccaaagagtttcgtaaagtggctcgagtccagcctgag
tatttggaagcgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (22)   

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