KEGG   Nothobranchius furzeri (turquoise killifish): 107381208
Entry
107381208         CDS       T05163                                 
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
nfu  Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03020  RNA polymerase
nfu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:nfu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107381208 (polr2b)
  09124 Replication and repair
   03420 Nucleotide excision repair
    107381208 (polr2b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nfu03021]
    107381208 (polr2b)
   03400 DNA repair and recombination proteins [BR:nfu03400]
    107381208 (polr2b)
Enzymes [BR:nfu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     107381208 (polr2b)
Transcription machinery [BR:nfu03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     107381208 (polr2b)
DNA repair and recombination proteins [BR:nfu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      107381208 (polr2b)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 107381208
NCBI-ProteinID: XP_015808266
UniProt: A0A1A8ABG3
Position
sgr01:complement(60418518..60427387)
AA seq 1174 aa
MYDQDEDNQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIMKEGEDPAHTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPDNEDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFVGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq 3525 nt   +upstreamnt  +downstreamnt
atgtacgaccaggacgaagataatcaatatgatgaagatgatgatgaaatcactccggac
ttgtggcaggaggcatgttggattgttatcagctcctactttgatgagaagggcctggtg
cggcaacagctggactcatttgatgagttcattcagatgtctgttcagaggattgtagaa
gatgctccgcccatcgacttgcaggctgaagcccaacacacctcgggtgaggtggaggag
ccgcctcgttacctgctgaaatttgagcaaatctacctgtccaaacctacccactgggag
agagatggtgctccttctcccatgatgcccaacgaagcccgactgagaaacctcacgtac
tcagcccccctgtatgtggacatcacaaagaccatcatgaaggaaggtgaagatccagct
catacacaacaccagaagaccttcattggtaaaattcccatcatgctgcgctccacttac
tgcctgctgagtggtctgaccgacagagatctatgtgagctcaatgagtgtccattggac
cctgggggttatttcatcattaacggttctgagaaggtgctgatcgcccaggagaagatg
gctaccaacacggtttacgtgttcgccaagaaggactcaaagtatgcctacacagctgag
tgccgttcctgtttggagaactcctctcgtcccaccagcaccatatgggtcagcatgatg
gctcggggaggacagggggtaaagaagagtgcgatcggtcagaggatcgtttccaccttg
ccatacatcagacaggaagttcccatcatcatcgtgtttcgggctttgggctttgtttca
gacagagacatcttggaacacatcatctacgactttgacgaccctgagatgatggagatg
gttaagccatctctggatgaagcatttgtgatccaggagcagaatgtggcgctgaatttc
attggttccagaggagccaaacctggagtgacgaaggagcgaagaatcaaatacgccaaa
gaagttctgcagaaagaaatgttgccacacgtcggagtcagtgacttctgtgagaccaaa
aaggcgtatttcttagggtacatggtccatcggctgctgctcgctgctcttggcagacgg
gagctggatgacagagatcactatggtaacaagagactggatctggctggaccgcttttg
gctttcctgttcagggggatgtttaagaaccttctaaaggagatcaggatttatgctcag
aagttcatcgatagaggaaaagacttcaacctggagctcgccatcaagactcgtatcatc
tcagatggactcaagtactcgctggccacaggaaactggggcgacgttaagaaggctcac
caggctcgagctggagtgtctcaggtgttgaaccgtctcaccttcgcctccacattgtca
catcttcgtcgagtcaactctcccatcggcagagatggaaaactggcaaagcctcgacag
ctgcacaacactctgtggggcatggtgtgtccagctgaaactcctgagggtcatgctgtg
ggtctggtgaagaacctggccctgatggcctacatctctgtgggctcgcagccgtcaccc
atcctggagtttctggaggagtggagcatggagaacctggaggagatctcccctgctgcc
atcgctgatgccactaaaatctttgtgaacggctgctgggtcggaatccacaaagacccc
gagcagctgatgaacacgctgaggaagctccgccgacaaatggacatcattgtgtctgag
gtatcaatgatcagagacattcgagaacgtgagatcaggatttacacggatgccgggagg
atttgcagaccgctgctgattgtagagaagcagaaacttctgctgaagagacgacacatc
gaccagctgaaggagagagaatataacaactacagctggcaggacctggtggcgagtggt
gtagtggaatacattgacacgctggaggaggaaactgtcatgctcgccatgacccccgat
gaccttcaggaaaaaggcgtggcctattgttcgacgtacacccactgtgaaatccatcca
tctatgatcctcggagtgtgtgcctccatcatcccgttcccggatcacaaccagtccccc
aggaacacgtaccaatctgctatgggcaaacaggccatgggcgtctacatcaccaacttc
catgtgagaatggacacgctggctcacgtgttgtactaccctcagaaaccactggtcacc
actcgatccatggagtacctgcgcttcagagaactgccagcagggatcaattcaatagtt
gccattgcttcatataccgggtacaaccaggaggactctgtgatcatgaacaggtcggct
gtagaccgagggttcttcaggtctgttttttatcgatcctacaaagagcaggagtctaag
aaaggttttgatcaggaagagatctttgagaagccgactcgtgaaacctgtcagggtatg
agacacgccatctatgacaagctggacgacgacggtctcattgctcctggtgttcgtgtg
tccggagaggacgtgattattgggaaaaccgtgacactgccagacaacgaagatgagttg
gacagcacaaaccggcgctacaccaagagagactgcagcaccttcctcagaaccagtgag
acaggcatagtggaccaggtcatggtgaccctgaaccaggaaggctacaagttctgcaaa
atcagggtacgttcagttcgaattcctcagattggagacaagtttgccagtcgtcacgga
cagaagggaacttgtgggattcagtacagacaagaggatatgccattcacctgtgaggga
atcacacctgacatcatcatcaaccctcacgccattccttctaggatgactgtcggccat
ttgatcgagtgtttgcagggcaaagtttctgccaacaaaggagagattggggacgccaca
ccatttaatgatgctgtcaacgtgcagaaagtgtcaaacctgctgtctgaatatggatac
cacctgagaggaaatgaggtcctgtataacggcttcactgggaggaagctgacgtctcag
atctttgttggtcccacatattatcagcgactgaagcacatggtggacgataaaatccac
tcgagggcccggggccctgtccagatcctcaaccggcagccgatggagggccgatctcgt
gacggcggtctgcgtttcggggagatggagcgtgattgtcagatcgctcacggcgctgct
cagttccttagagagcgtctgtttgaggcttctgacccatatcaggttcatgtgtgcaac
ctgtgcggcctgatggccatcgccaacactcgcacacacacatatgagtgtcggggctgt
cgcaacaagacacagatctctcttgtccggatgccgtacgcctgcaagcttctgttccag
gagttgatgtcgatgagcatcgctcctcgaatgatgacctcatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (49)   
   KEGG ORTHOLOGY (1)   
   RefGene (45)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (7)   
   Pfam (7)   
All databases (71)   

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