KEGG   Nannochloropsis gaditana: NGA_0364100
Entry
NGA_0364100       CDS       T02917                                 
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2
  KO
K14327  regulator of nonsense transcripts 2
Organism
ngd  Nannochloropsis gaditana
Pathway
ngd03013  Nucleocytoplasmic transport
ngd03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ngd00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    NGA_0364100 (UPF2)
   03015 mRNA surveillance pathway
    NGA_0364100 (UPF2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ngd03019]
    NGA_0364100 (UPF2)
Messenger RNA biogenesis [BR:ngd03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     NGA_0364100 (UPF2)
   mRNA cycle factors
    P-body specific factors
     NGA_0364100 (UPF2)
SSDB
Motif
Pfam: MIF4G
Other DBs
NCBI-GeneID: 17361500
NCBI-ProteinID: XP_005854729
UniProt: K8YVG1
Position
Unknown
AA seq 419 aa
MDVIVEEGGEEGGEDDEGLTDEYRSGLKEEDGKEGVEEGATPAHYQVNHLLHDILPLCYE
KEKTDAFILQIAPFVKRKGVAKRKTVKYVGELVKFKICPPIVPFTFLNACLEAFSRHNVE
LACALLESCGRFLFLTPHTHTRLKGYLSTMERLKRVKSLDPTLEVLIDNACLICNPPSQR
TTTRQTVLLPPLYAYLRFLLFERLSPKNTDDVLYSLRKFPWKTPRGGAPAEATGLSELEV
FFLRSVLQAARGKFHALHALADVVAGLGKYHENMAVSMVDEVLEELKRGLETAGGRRDRD
TQGFLALSRLLGEFYNYNLIPHALVFDTLYLFLHYGHEVPPHPSLPSSIPPSFPPYVTHD
PRILTPLDPPADTFRCHLVINLLQACGPLLAGKGHEKVRGKLSLFLTYFQRYLFCRGYV
NT seq 1257 nt   +upstreamnt  +downstreamnt
atggatgtcatagtggaggaggggggggaggaagggggggaggacgacgaaggcctgacg
gacgagtaccggtctggtttgaaggaggaggacgggaaggagggcgtggaggagggagca
acgccggcccactaccaggtcaaccacttgctgcatgacattttgccgctctgctacgaa
aaggagaagacggacgcatttatattgcaaattgctccttttgtgaagcggaaaggggtg
gcgaagcgcaagaccgtcaagtacgtcggagagctcgtcaagttcaagatttgtcccccc
attgtgcctttcacattcctcaacgcctgcttggaagcgttttcccgccacaacgtggag
ctcgcctgtgccctgctggaaagctgcggacgcttcctcttcctcactcctcacacgcac
acgcgcctgaagggctacttgagcaccatggagaggctcaagcgggtgaaatcgctcgac
cccaccctggaggttttgatcgacaacgcctgcctgatttgcaaccctccttcccagcgg
acaacgacccggcaaaccgtcctccttcccccgctctatgcctaccttcgtttcctcctc
tttgagcgcctcagcccgaaaaacaccgacgacgtcctctattccctgcgcaaatttccc
tggaaaactccgagggggggggcgccagccgaagccacagggttgagtgagctggaagtg
tttttcctccgctcggtcctgcaagccgcgcggggtaagttccacgccttgcatgccctg
gcggacgtggtggctggcctggggaaataccacgagaacatggccgtgagcatggtcgac
gaggtcttggaggagctcaaacgggggttggaaacggcggggggacgccgggatcgggac
acccaaggcttcttggccctcagccgtttattgggcgagttttataactacaatttgatt
cctcatgccttggttttcgacacgttgtaccttttcctgcactacggccacgaggtgcct
ccgcacccctccctgccttcctccatcccgccctcgttccctccctacgtcacgcacgac
cctcgcatcctcacacccttggatccccccgcagataccttccgctgccacctcgtcatc
aaccttctgcaggcctgcggtccgctcttggcgggcaaagggcacgagaaagtgcgaggg
aagctttccctttttctcacctacttccaacgctacctcttttgtcgcggctacgta

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (33)   

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