KEGG   Naegleria gruberi: NAEGRDRAFT_70010
Entry
NAEGRDRAFT_70010  CDS       T01241                                 
Name
(RefSeq) hypothetical protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
ngr  Naegleria gruberi
Pathway
ngr03018  RNA degradation
ngr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ngr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    NAEGRDRAFT_70010
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NAEGRDRAFT_70010
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ngr03019]
    NAEGRDRAFT_70010
   03041 Spliceosome [BR:ngr03041]
    NAEGRDRAFT_70010
Messenger RNA biogenesis [BR:ngr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     NAEGRDRAFT_70010
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     NAEGRDRAFT_70010
Spliceosome [BR:ngr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    NAEGRDRAFT_70010
SSDB
Motif
Pfam: LSM Striatin DUF3276 DUF4834 Macoilin Presenilin
Other DBs
NCBI-GeneID: 8855539
NCBI-ProteinID: XP_002675001
JGI: Naegr1_70010
UniProt: D2VM49
AA seq 130 aa
MLVELKNGETFNGTLTNCDQFMNMNLEDVTCTSRDGTRFWKMDKVYIRGYTLKYIRILDE
IINKVKEEQKKSRSKPQQQGNSNNNSNTNNSNTSSQRSRSNSSGRGSGMRGTNDNRSSSG
RGKISFSFLY
NT seq 393 nt   +upstreamnt  +downstreamnt
atgttggttgaattaaaaaatggtgaaacatttaatggcactcttacaaattgcgaccaa
tttatgaatatgaatttagaagatgttacttgcactagtcgtgatggtactaggttttgg
aaaatggacaaagtttacattagaggatacacattaaaatacattcgaattttggatgaa
attataaacaaagttaaagaagaacaaaagaagagcagaagtaaaccacaacaacaagga
aattctaataataatagcaatactaataattcaaatacatcatcacaaagatcacgtagt
aatagttcaggtagaggatcggggatgagaggaactaatgataatagatcatcttcggga
agaggtaagattagtttttcttttttgtattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (24)   

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