KEGG   Candidatus Nitrospira inopinata: NITINOP_3288
Entry
NITINOP_3288      CDS       T04169                                 
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
nio  Candidatus Nitrospira inopinata
Pathway
nio03410  Base excision repair
nio03430  Mismatch repair
nio03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:nio00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    NITINOP_3288 (recJ)
   03430 Mismatch repair
    NITINOP_3288 (recJ)
   03440 Homologous recombination
    NITINOP_3288 (recJ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nio03400]
    NITINOP_3288 (recJ)
DNA repair and recombination proteins [BR:nio03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     NITINOP_3288 (recJ)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     NITINOP_3288 (recJ)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      NITINOP_3288 (recJ)
SSDB
Motif
Pfam: RecJ_OB DHH DHHA1
Other DBs
NCBI-ProteinID: CUQ68260
UniProt: A0A0S4L0T2
Position
1:complement(3189151..3190848)
AA seq 565 aa
MGSKLWVFRDIDLTRREALAQALAISSATASLLLARGVTTLDEAAAWMSPGIVHDPFLIP
DMDRAVDRLHQAMVNGERVCFYGDYDVDGMSATGIYLSFFQGLGANVSAYVPHRIREGYG
LNEGAVRRLASEGVTLLVTSDCGTTSHREIALANQLGLDVIVTDHHQTDGELPPAVAVMN
PHRRDARYPFHGLCSGGLAYKVACAYEARHGSGEVPTDALLDLVALSTIADVVPLQDENR
VFVREGLAQLSRGARCGIRALKLVSGLANDCTADAIAFKLAPRLNAAGRLDEGLKGVRLL
TTESEAEAKRLAEELDQLNRLRQRLESEIMRDATAAVEAGELPDAIVVASREWHMGVVGI
VASRLVERFHRPAVVIALDGRGIGKGSARTIPGFDLYQGLASCRDLLLAFGGHPSAAGVT
VHESRLSEFAGRFAAVAGRWAQAARRVPTLHLDSEVRLNEVTYRLLQEIGSLHPFGAGNP
EPMFAGRRLEITNARVVGEKHLKMTLRQEGSPPFDGIGFGMKSLETQGVSLRDLVDVAFT
PELNRWNGYDRIQLRIRDIRPSDGA
NT seq 1698 nt   +upstreamnt  +downstreamnt
atggggtccaaactctgggtctttcgcgatattgacctcacccgccgggaggccttggcc
caggctctggcaatttcctcggcgacggcttcgctgttgttggctcgaggcgtcacgacg
ttggacgaggccgccgcctggatgtctcccggcatcgtccatgatccctttttgattccg
gacatggatagagccgttgatcgccttcatcaggccatggtcaacggcgagcgggtgtgt
ttttatggtgattacgacgtcgacggcatgtcggcaacaggaatttatctctcgtttttt
caagggcttggggccaatgtctctgcttatgtgcctcatcgcattcgggaaggctatggt
ctcaatgagggggcggtgcgccggttggcgagtgaaggggtgacgttgctcgtgacgtcg
gactgtggcacgacatcgcatcgtgaaatcgcgttggcgaatcaattggggctcgacgtt
attgtgacggatcatcatcagacggacggggagttgcctcccgccgtggcggtgatgaac
ccccatcgtcgcgacgcgcggtatccgtttcacggattgtgttcgggcgggttggcctac
aaggtggcgtgcgcgtacgaagcccgtcacggaagcggggaggtgccgacggacgcgctt
ctggacttggtggcgctttcgaccatcgccgacgtcgttccgctgcaggacgagaatcgc
gtctttgtgcgcgagggattggcacaactgtcccgtggggcgcgctgcggaatccgagcc
ttgaagctggtgtccggtctggcgaacgactgcacggcggatgcgatcgcgttcaaactg
gcgccgagattgaatgcggccggacggttggatgaaggcctgaagggggttcggctgctg
accacggagtccgaagcggaggcgaagcggttggccgaggagcttgatcaattgaatcga
ctccgccagaggctggagtccgagatcatgcgggacgcgacggccgcggtggaagcgggt
gagctgcctgatgcgatcgtcgtggcttctcgggaatggcacatgggggtggtgggcatc
gttgcgtctcgtctcgtggaacggtttcataggccggccgtggtgatcgctctcgatggg
cgggggatcggcaagggatcggcccgcaccatccccggattcgatctgtatcaagggttg
gcttcttgccgtgacctgctcctggcgttcggcggacaccccagcgcggcgggagtgacg
gtgcatgagagccgattgtccgaattcgccggacgctttgcggcggtcgcgggccggtgg
gcgcaagccgcgcgccgtgtcccgacgctgcatctcgactccgaggtgcggttgaacgag
gtgacctatcggttactccaagagatcggttcgttgcatccgttcggggccggcaatccc
gaaccgatgttcgcgggaagacggctcgaaatcacaaacgctcgggtggtgggagagaaa
catctgaagatgacgctacgccaggagggatcgccgccttttgatggaatcggctttggg
atgaaatctctggaaactcagggggtgtctctgagagatcttgtggacgtggcgttcacg
ccggagttgaatcgctggaacgggtatgaccggattcagttgcggatccgcgatatacgg
ccgtcggatggagcatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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