KEGG   Nomascus leucogenys (northern white-cheeked gibbon): 100585697
Entry
100585697         CDS       T03265                                 
Symbol
COL5A1
Name
(RefSeq) collagen alpha-1(V) chain isoform X1
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
nle  Nomascus leucogenys (northern white-cheeked gibbon)
Pathway
nle04820  Cytoskeleton in muscle cells
nle04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:nle00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    100585697 (COL5A1)
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    100585697 (COL5A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:nle00536]
    100585697 (COL5A1)
Glycosaminoglycan binding proteins [BR:nle00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   100585697 (COL5A1)
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_1
Other DBs
NCBI-GeneID: 100585697
NCBI-ProteinID: XP_030674005
Position
8:110696935..110904266
AA seq 1840 aa
MDVHTRWKARSPLRPGAPLLPPPLLLLLLLWAPPPSRAAQPADLLKVLDFHNLPDGITKT
TGFCATRRSSKGPDVAYRVTKDAQLSAPTKQLYPASAFPEDFSILTTVKAKKGSQAFLVS
IYNEQGIQQIGLELGRSPVFLYEDHTGKPGPEDYPLFRGINLSDGKWHRIALSVHKKNVT
LILDCKKKTTKFLDRSNHPMIDVNGIIVFGTRILDEEVFEGDIQQLLFVSDHRAAYDYCE
HYSPDCDTAVPDTPQSQDPNPDEYYTEGDGEGETYYYEYPYYEDPEDLGKEPTPSKKPVE
AARETTEVPEELTPTPTEAAPMPETSEGAGKEEDVGIGDYDYVPSEDYYTPSPYDDLTYG
EGEENPDQPTDPGAGAEIPTSTASTSNSSDPAPPPGEGADDLEGEFTEETIRNLDENYYD
PYYDPTNSPSEIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAG
LPGPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPM
VSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQG
PPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPG
DDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPG
PPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQG
PPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRG
EDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFSGANGEKG
GRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTG
FPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPG
PPGPPGEQGLPGLTGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEG
PPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQG
PVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADG
EPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRG
PSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSG
AAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPG
PTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDG
LRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQG
EKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAG
HPGPPGPPGPPGEVIQPLPIQASRTRRNIDASQLLDDGNGDNYVDYADGMEEIFGSLNSL
KLEIEQMKRPLGTQQNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGS
TCVFPDKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDAEGNPVGVVQMTFLRLLSASA
HQNVTYHCYQSVAWQDAATGSYDKAIRFLGSNDEEMSYDNNPYIHALVDGCATKKGYQKT
VLEIDTPKVEQVPIVDIMFNDFGEASQKFGFEVGPACFMG
NT seq 5523 nt   +upstreamnt  +downstreamnt
atggacgtccatacccgctggaaagcgcgcagcccgctccgcccgggcgccccgctgctg
cccccgccgctgctgctgctgctgctgctgtgggcgccgcctccgagccgcgcagctcag
ccagcagatctcctgaaggttctagattttcacaacttgcctgatggaataacaaagaca
acaggcttttgtgccacgcggcgatcttccaaaggcccggatgtcgcttacagagtcacc
aaagacgcgcagctcagcgcacccaccaagcagctgtaccctgcgtctgcatttcccgag
gacttctccatcctaacaactgtgaaagccaagaaaggcagccaggccttcctggtctcc
atctacaacgagcagggtatccagcagattgggctggagctcggccgctctcccgtcttc
ctctacgaggaccacacggggaagcctggcccagaagactaccccctcttccggggcatc
aacctgtcagatggcaagtggcacagaattgctctcagcgtccacaagaaaaatgtcacc
ttgatcctcgactgtaaaaagaagaccaccaaatttcttgaccgcagcaaccaccccatg
atcgacgtcaatggcatcatcgtgtttggcacccggatcctggatgaggaggtgtttgag
ggtgacatccagcagctgctctttgtctcagaccaccgggcagcttatgattactgcgag
cactacagccctgactgtgacactgcagtacctgacaccccacagtcgcaggaccccaat
ccagatgaatattacacggaaggagacggcgagggtgagacctattactacgaatacccc
tactacgaagacccggaagacctagggaaggagcccacccccagcaagaagcccgtggaa
gctgccagagaaaccacagaggtccccgaggagctgaccccgacccccacggaagctgct
cccatgcctgaaaccagtgaaggggctgggaaggaagaggacgttggcatcggggactat
gactacgtgcccagtgaggactactacacgccctcgccttacgatgacctcacctatggc
gagggggaggagaaccccgaccagcccacagaccctggcgccggggccgagattcccacc
agcaccgccagcacctccaactcctccgacccagctccgcctccaggggaaggtgcggat
gacttggagggggagttcactgaggaaacgatcaggaaccttgacgagaactactacgac
ccctactacgaccccaccaactccccgtcggagatcgggccgggaatgccggcgaaccag
gataccatctacgaagggattggaggacctcggggcgagaaaggccaaaagggagaacca
gcgattatcgagccgggtatgctcatcgagggtccgcctggcccggaaggccctgcgggt
cttcccggacctccaggaaccatgggtcccactggccaagtcggggaccctggagaaagg
ggcccccctggacgcccaggccttcctggggccgatggcctgcccggtcctccaggaacc
atgctcatgctgcccttccggtttggaggtggcggcgatgcgggctccaaaggccccatg
gtctcagcccaggagtcccaggcacaagccatccttcagcaggccaggttggcactgagg
ggaccagccggcccgatgggtctcacagggaggcccggccctgtgggtccccctgggagc
ggaggtttgaagggcgagccgggagacgtggggcctcagggtcctcgaggtgtgcaaggc
ccacctggtccggccgggaagcccggaagacggggtcgggctgggagtgacggagccaga
ggaatgcctggacaaactggccccaagggtgaccggggtttcgacggcctggctgggttg
ccgggcgagaagggccacaggggtgaccccggtccttccggcccaccaggacctccagga
gacgacggagaaaggggtgatgacggagaagtcgggcccagggggctgcctggggagccc
gggccacgtggtctgctcgggccgaaggggcccccaggtcctcccggacctcccggtgtc
acgggtatggatggccagccggggccaaaaggaaacgtgggtccccagggagagcctggc
cccccgggacagcagggtaatccaggcgcccagggtcttccaggcccccagggtgcaatt
ggtcctccaggagaaaagggtcccttgggtaaaccaggccttccaggaatgcccggtgct
gacggacccccgggacaccctggcaaagaaggccctccaggagagaaaggaggtcagggt
ccacctggcccccagggtccgatcggctacccaggtcctcgaggagtcaagggggccgat
ggcatccgtggtctgaagggcacaaagggcgagaagggtgaagacggctttcctgggttt
aaaggcgacatgggcatcaagggtgatcggggggagattggcccacccggtcccagggga
gaagatggccctgaaggcccaaagggtcgcggaggtcccaatggtgaccccggtcctctg
gggccccctggggagaagggaaaactcggagtcccagggttaccagggtacccaggaaga
caaggaccaaagggctctattggattccctggattttctggcgccaacggagagaagggc
ggcagggggacccctggaaagccgggaccgcgggggcagcgaggcccaacgggtccgagg
ggtgaaagaggcccccggggcatcactgggaagcctggccccaagggcaactccggaggt
gacggcccagctggccctcctggtgaacggggacccaacggaccccaaggacccacggga
tttcctggaccaaagggtccccctggccctccaggcaaggatggactcccaggacaccct
ggacagagaggcgagactggtttccaaggcaagaccggccctccaggccccccaggtgtg
gtcggccctcagggtcccacgggagaaacgggcccaatgggtgagcgtggccaccctggg
ccaccgggaccccccggtgaacaggggcttccaggccttactggaaaagaagggacgaag
ggtgacccgggccccgcaggcctccctgggaaagatggccctccaggattacgtggtttc
cctggggaccgagggcttcctggtccagtgggagctcttggactgaaaggcaatgaaggg
ccccctggcccaccaggccctgcgggatctccaggggagagaggtccagctggagccgct
gggcccatcggaattccagggagacctgggccccagggacccccagggccggcaggagag
aaaggggctcctggcgagaaaggcccacaaggcccagctggccgagacggtctccagggt
cctgtggggctcccgggtccagctggccctgtgggtccccctggagaagatggagataag
ggagagatcggggagccagggcagaaaggaagcaagggggacaaaggagagcagggtcct
cctgggcctacaggtcctcaaggccccatcggacagccaggcccctctggagctgacggc
gagccggggcctcggggccagcagggccttttcgggcagaaaggtgatgaaggtcccaga
ggctttcctggaccccctgggccagtggggctgcagggtttgccaggacctccaggtgag
aagggcgagacaggagacgtgggccagatgggccccccgggtccccctggcccccgagga
ccctccggagctccaggtgctgatggcccacaaggtcccccgggtggaataggaaaccct
ggtgcagtgggagagaagggtgagcccggcgaagcaggcgagcctggccttccgggagaa
ggcggccccccgggacccaaaggagaaaggggagagaagggcgagtcgggcccttcgggt
gctgctggaccccctggacccaaaggccctcccggagacgatggtcccaaaggcagccct
ggcccagtgggttttcctggagatcccggcccccctggagagcctggccccgcgggtcaa
gatggtccccctggtgacaaaggagacgatggtgaacccgggcagacgggatcccccggc
cctactggtgaaccaggtccatccgggcctccaggaaaaaggggtcccccaggccccgca
ggcccggaaggcagacagggagagaaaggggccaagggagaagccggcttggaaggccct
cctgggaagactggccccatcggcccccagggggcccctgggaagcccggaccggatggc
cttcgagggatccccggccctgtgggagaacaaggtctcccaggatccccaggcccggac
ggtccccccggccccatgggtcccccaggacttccgggcctcaagggagattctggtccc
aaaggtgaaaagggtcatccaggcctgatcgggctcatcggtcctccgggtgaacagggt
gagaagggtgaccgtggtctccccggcccccagggctcctccggtcctaagggagaacag
ggtatcactggtccttctggcccgattgggcctcctgggccccctggcctgccgggtccg
cctggtccaaaaggtgctaagggctcctcgggtccaactggcccgaagggtgaggcgggc
cacccaggacccccaggacccccgggccccccgggagaggtcatccagcccctgccgatc
caggcatccaggacgcggcggaacatcgacgccagccagctgctggatgacgggaatggc
gacaactacgtggactacgcggacggcatggaagagatcttcggctctctcaactccctg
aagctagagattgagcagatgaagcggcccctgggcacgcagcagaaccccgcccgcacc
tgcaaggacctgcagctctgccaccctgactttccagatggtgaatactgggtcgatcct
aaccaaggatgctccagggattccttcaaagtttactgcaacttcacagccggggggtcg
acatgcgtcttccctgacaagaagtccgaaggggccagaatcacttcttggcccaaagaa
aacccgggctcctggttcagtgaattcaagcgtgggaaactgctctcctatgtggacgcc
gagggcaaccctgtgggtgtggtacagatgaccttcctgcggctgctgagcgcctctgcc
caccagaacgtcacctaccactgctaccagtcagtggcctggcaggacgcagccacgggc
agctacgacaaggccatccgcttcctgggctccaacgacgaggagatgtcttatgacaac
aacccctacatccacgccctggtggacggctgtgctaccaagaaaggctaccagaagacg
gttctggagatcgacacccccaaagtggagcaggtgcccatcgtggacatcatgttcaat
gacttcggtgaagcgtcacagaaatttggatttgaagtggggccggcttgcttcatgggc
tag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (48)   

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