KEGG   Neisseria meningitidis H44/76 (serogroup B): NMBH4476_0932
Entry
NMBH4476_0932     CDS       T01946                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
nmh  Neisseria meningitidis H44/76 (serogroup B)
Pathway
nmh03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:nmh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    NMBH4476_0932 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nmh03400]
    NMBH4476_0932 (mfd)
Enzymes [BR:nmh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     NMBH4476_0932 (mfd)
DNA repair and recombination proteins [BR:nmh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      NMBH4476_0932 (mfd)
SSDB
Motif
Pfam: TRCF UvrB_inter DEAD CarD_TRCF_RID Helicase_C MFD_D3 ResIII ERCC3_RAD25_C UB2H AAA_30 HemY_N Glyco_tran_WecG
Other DBs
NCBI-ProteinID: ADY95546
Position
complement(1032297..1036436)
AA seq 1379 aa
MTYPIPKPREKSRWPNLSQGSLPLALARYLPHKQLKVVLTQDAEQALRLQTAWLFFRPHD
TAVFLPDWETLPYERFSPHQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAG
RTFWLKTGQTLDIGRLKSDLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSEMPYRIDLF
DDEIDSIKTFDTDTQRTISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDGNPNDAAVY
KAVSNGHFGAGVEYYLPLFFENELETLFDYIGEDALFVSLDDVHAEANRFWSDVKSRYAM
AQGDETYPPLLPQYLYLSADVFAGRLKNYGQVLPDVSGKEYTLPDLAVNRQADEPLQALK
DFQTAFDGRILLCAESLGRRETMLGFLQQNGLKAKPVSDWQGFLSAHEPLMITVAPLAYG
FKLGGLQSPNQQQPTPSPVGEGWGEGKAVAAQTEFSAAAINPLPSPLPQEREQSAAAVSD
SLKAAAVSTESSLPLGTSNLHGQIRQQPAPSPVGEGWGEGKAVAAQTEFPASATNPLPSP
LPQEREQSAAAVSDDLKTKSSLHPVANNLHGQIRQQPTPSPVGEGWGEGKAVAAQTEFSA
AATNPLPSPLPQEREQSAAVVSDSLKAAAVSTESSLPPGKSNLHGQIQQQPAPSPVGEGW
GEGKAVAAQSAIAVITESDLYQYVARSRIHNRRKKHAAVSDGLLRDLAEINIGDPVVHEE
HGIGRYMGLVTMDLGGETNEMMLLEYAGEAQLYVPVSQLHLISRYSGQAHENIALHKLGS
GAWNKAKRKAAEKARDTAAELLNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAA
AIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQ
NFADRFADFPVKVASLSRFNNSKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVI
IDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLSVK
TFVKPFSEGSVREAVLRELKRGGQVFFLHNEVDTIENMRERLETLLPEARIGVAHGQLRE
RELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSH
HQAYAYLLTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSGEMIQ
VGFTLYTEMLKQAVRDLKKGRQPDLDAPLGITTEIKLHSPALLPESYCPDIHERLVLYKR
LAVCETVQQINAIHEELVDRFGLPEQPVKTLIESHHLRLMAKELGIDAIDAAGEAVTVTF
GKNNNVDPTEIILLIQNDKKYRLAGADKLRFTAEMENIEVRINTVKNVLKTLQNRCLPK
NT seq 4140 nt   +upstreamnt  +downstreamnt
atgacctaccccatccccaaaccccgtgaaaaatcccgttggcccaatctttcgcaaggc
tcgctgcccttggctttggcgcgttatctgccgcataagcagctcaaggttgtcttgact
caagatgcggaacaggcgctacgccttcagacggcatggctgtttttccgtccgcacgat
acggcggtgttcttgccggactgggaaacgctgccttacgagcgtttttcgccgcatcag
gatttagtgtcggagcgcttgtcggcattgtggcagattaaaagcggcgcggcggacgtg
ttgttcgtgccggttgctacggcgatgcagaagctgccgcctgtgccgtttttggcgggg
cgcacgttttggctgaaaacagggcagactttggatataggccgtctgaaaagcgatttg
gtggatgcaggttataaccatgtttcccacgttgttgcggcaggcgagttcgctgtgcgc
ggcggcattgtcgatttgttccccatgggcagcgaaatgccctaccgcatcgatttgttt
gacgatgaaatcgacagcatcaaaacctttgatacggacacgcagcgcaccatctccccc
gtttccgaaatccgcctgctgccggcgcacgaattccccaccgacagcgaggcgcaaaaa
atcttccgcagccgcttccgcgaggaagtcgatggtaatccgaacgatgcggctgtgtac
aaagccgtcagcaacggtcatttcggcgcgggcgtggaatactacctgccgctgtttttt
gaaaacgagttggaaacgctgtttgactatatcggcgaagatgcgctgtttgtctcttta
gacgatgttcatgccgaggcaaaccgtttttggagcgatgtcaaatcgcgttacgcgatg
gcgcagggcgacgaaacctatccgcctttgcttccacagtatttgtatctctctgccgat
gtgttcgcaggccgtctgaaaaactacggacaggtgctgcccgatgtttccggcaaggaa
tacaccctgcccgaccttgccgtcaaccgccaagcagatgagccgttgcaggcattgaag
gattttcagacggcgtttgacggacggattttgctgtgcgccgaaagtttgggacggcgc
gaaactatgctcggtttcttgcagcaaaacggtttgaaagccaaacccgtgtccgactgg
cagggctttttatcggcacacgagccgctgatgattacagtggcgccgttggcatacggg
ttcaaactgggcggactgcaatcgccgaaccaacagcaacctactccctcccccgtgggg
gagggttggggagagggcaaagcagttgccgctcaaactgaattttccgcagccgcaata
aaccctctccctagccctctcccacaggagagggaacaaagtgcagccgccgtttcagac
agtctgaaagcagccgccgtttcaaccgaaagcagcctgcccctcggtacaagtaatctg
cacgggcaaatccgacagcaacctgccccttcccccgtgggggagggttggggagagggc
aaagcagttgccgctcaaaccgaatttcccgcatccgcaacaaaccctctccctagccct
ctcccacaggagagggaacaaagtgcagccgccgtttcagacgacctgaaaaccaaaagc
agcctgcatcccgtcgcaaataatctgcacgggcaaatccgacagcaacctactccctcc
cccgtgggggagggttggggagagggcaaagcagttgccgctcaaaccgaattttccgca
gccgcaacaaaccctctccctagccctctcccacaggagagggaacaaagtgcagccgtc
gtttcagacagtctgaaagcagccgccgtttcaaccgaaagcagcctgccccccggtaaa
agtaatctgcacgggcaaatccaacagcaacctgccccctcccccgtgggggagggttgg
ggagagggcaaagcagttgccgctcaaagtgccatcgccgtcatcaccgaatccgatctc
taccaatacgtcgcccgttcgcgcatccacaaccgccgcaagaaacacgccgccgtttca
gacgggctgttgcgcgaccttgccgaaatcaatatcggcgaccccgtcgtgcacgaagaa
cacggcatcgggcggtatatgggcttggtaacgatggacttgggcggcgaaaccaacgaa
atgatgttgctcgaatacgcaggcgaagcgcagctttatgtgcctgtttcgcaactgcat
ttaatcagccgctactccggtcaggcgcatgaaaacattgccctgcacaagctcggcagt
ggcgcgtggaacaaggcgaagcgcaaagccgccgaaaaagcgcgcgacaccgccgccgaa
ttgctcaacctctacgcccaacgcgccgcccaatcgggacacaagtttgaaatcaacgag
ttggactatcaggcgtttgccgacggcttcggctacgaggaaaccgaagaccaggccgcc
gccatcgccgccgtgattaaagatttgacgcaagcgaagccgatggatcgccttgtgtgc
ggcgatgtcggcttcggcaaaaccgaagtcgccctgcgcgccgcgtttgtggcggtgatg
ggcggcaaacaggtcgccgtacttgctccgaccacgcttttggtcgagcagcacgcgcaa
aacttcgccgaccgtttcgccgatttccccgtgaaagtcgccagcctttcgcgtttcaac
aacagcaaagccaccaaagccgcgctggaaggcatggcagacggcacggtcgatattgtt
atcggtacgcacaaactggtgcaggacgacatcaaattcaaaaacttaggtttagtgatt
atcgacgaagaacaccgcttcggcgtgcgccagaaagagcagctcaaacgcctgcgcgcc
aatgtcgacatcctcaccatgaccgccacaccgattccgcgcactttaagtatggcgttg
gaaggactgcgcgacttctcgctgattaccaccgcgcccagccgccgcctctccgtcaaa
acctttgtcaaaccctttagcgaaggcagcgtgcgcgaagccgtattgcgcgaactcaaa
cgcggaggacaggtatttttcctgcacaatgaagtggataccatcgaaaacatgcgtgag
cggctggaaaccctgctgcccgaagcccgcatcggcgtggcgcacggacaactgcgcgag
cgcgagctggaacaagtcatgcgcgactttttgcagcaacgatttaacgtgttgctctgt
tccaccatcatcgaaaccggtatcgacattcccaacgccaacaccatcatcatcaaccgt
gccgacaaattcggattggcgcagctgcaccagcttcgcgggcgcgtcggacgcagccac
caccaagcctacgcctacctgctcacgcccgaatacatcaccaaagacgcagaaaaacgc
ctcgacgccatcgcggcagcagacgaactcggcgcaggtttcaccctcgccatgcaggat
ttggaaatccgcggcgcaggcgaaatcctcggcgaagggcagtccggcgaaatgatacag
gtcggcttcacgctctacaccgaaatgctcaaacaagccgtgcgcgatctcaaaaaaggc
cgccaacccgacctcgacgcgccgctgggcatcaccaccgaaatcaaactgcacagcccc
gccctactgcccgaaagctactgccccgacatccacgagcgtctcgtcctctacaaacgc
ctcgccgtctgcgaaaccgtgcagcaaatcaacgccatacacgaagaactcgtcgaccgc
ttcggcctgcccgaacaacccgtcaaaacccttatcgaaagccaccacctgcggcttatg
gcaaaagaattgggtatcgatgccattgatgcggccggcgaagcggtaacggtaaccttc
ggtaaaaacaataatgtcgatccaaccgaaatcatcctgctgattcagaacgacaaaaaa
taccgccttgccggcgccgataagctgcggtttaccgcagagatggaaaatatcgaggtc
agaatcaacaccgtaaaaaacgttttaaaaaccttgcaaaacagatgcctgcccaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (12)   
   Pfam (12)   
All databases (21)   

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