KEGG   Neisseria meningitidis NZ-05/33 (serogroup B): NMBNZ0533_0135
Entry
NMBNZ0533_0135    CDS       T01949                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
nmz  Neisseria meningitidis NZ-05/33 (serogroup B)
Pathway
nmz03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:nmz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    NMBNZ0533_0135 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nmz03021]
    NMBNZ0533_0135 (rpoC)
   03400 DNA repair and recombination proteins [BR:nmz03400]
    NMBNZ0533_0135 (rpoC)
Enzymes [BR:nmz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     NMBNZ0533_0135 (rpoC)
Transcription machinery [BR:nmz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     NMBNZ0533_0135 (rpoC)
DNA repair and recombination proteins [BR:nmz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      NMBNZ0533_0135 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 Apocytochr_F_C Peptidase_M23
Other DBs
NCBI-ProteinID: ADZ02620
Position
142771..146946
AA seq 1391 aa
MNLLNLFNPLQTAGMEEEFDAIKIGIASPETIRSWSYGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDYECLCGKYKRLKFKGVTCEKCGVEVTLSKVRRERMGHIELAAPVAHIWFLK
SLPSRLGMVLDMTLRDIERVLYFEAFVVTDPGMTPLQRRQLLTEDDYYNKLDEYGDDFDA
KMGAEGIRELLRTLNVAGEIEILRQELESTGSDTKIKKIAKRLKVLEAFHRSGMKLEWMI
MDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELHAPDIIVRNEKRM
LQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVG
PYLRLHQCGLPKKMALELFKPFIFHKLEKQGLASTVKAAKKLVEQEVPEVWDILEEVIRE
HPIMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQM
EARTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTRDRINAKGEGSLFADVKEVHRAYH
TKQVELGTKITVRLREWVKNEAGEFEPVVNRYETTVGRALLSEILPKGLPFEYVNKALKK
KEISKLINASFRLCGLRDTVIFADHLMYTGFGFAAKGGISIAVDDMEIPKEKAALLAEAN
AEVKEIEDQYRQGLVTNGERYNKVVDIWGRAGDKIAKAMMDNLSKQKVIDRAGNEVDQES
FNSIYMMADSGARGSAAQIKQLSGMRGLMAKPDGSIIETPITSNFREGLTVLQYFIATHG
ARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSDGFVMKAVVQGGDVIEALRDR
ILGRVTASDVVDPSSGETLVEAGTLLTEKLVDMIDQSGVDEVKVRTPITCKTRHGLCAHC
YGRDLARGKLVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASQVEAKSNGTA
RFSSQMRYVANNKGELVVIGRSCEVVIHDDIGRERERHKVPYGAILLVQDGMAIKAGQTL
ATWDPHTRPMITEHAGMVKFENVEEGVTVAKQTDDVTGLSTLVVIDGKRRSSSASKLLRP
TVKLLDENGVEICIPGTSTPVSMAFPVGAVITVREGQEIGKGDVLARIPQASSKTRDITG
GLPRVAELFEARVPKDAGMLAEITGTVSFGKETKGKQRLIVTDVDGVAYETLISKEKQIL
VHDGQVVNRGETIVDGAVDPHDILRLQGIEALARYIVQEVQEVYRLQGVKISDKHIEVII
RQMLRRVNIADAGETGFITGEQVERGDVMAANEKALEEGKEPARYENVLLGITKASLSTD
SFISAASFQETTRVLTEAAIMGKQDELRGLKENVIVGRLIPAGTGLTYHRSRHQQWQEVE
QETAETQVTDE
NT seq 4176 nt   +upstreamnt  +downstreamnt
atgaatttgttgaacttatttaatccgttgcaaactgccggcatggaagaagagtttgat
gccattaaaatcggtattgcctctcccgaaaccatccgctcatggtcttatggcgaagtc
aaaaaacctgaaaccatcaactaccgtacgttcaaacctgagcgtgacggtttgttctgt
gccaaaatctttggcccggtcaaagactacgaatgcttgtgcggaaaatacaaacgcttg
aaatttaaaggcgtaacgtgtgaaaaatgcggcgtggaagtaaccctgtccaaagtgcgc
cgcgaacgcatgggtcatatcgaattggctgcgcccgtcgcacatatttggttcttaaaa
tccctgccttcccgcttgggtatggtgttagacatgactttgcgcgacatcgagcgcgta
ttgtactttgaagcatttgtggtaaccgatcccggtatgactccgctgcaacgccgccaa
ttgctgactgaagacgattactacaacaagctggacgaatacggcgacgatttcgatgcc
aaaatgggtgcggaaggtatccgcgaattgctgcgtaccctgaatgtagcgggcgaaatc
gaaatcctgcgccaagagttggaatcgaccggttccgacaccaaaatcaaaaaaatcgcc
aaacgcttgaaagtattggaagccttccatcgttccggtatgaaactggaatggatgatt
atggatgtgctgccggtattgccgcctgatttgcgtccgttggttccattggatggtggt
cgttttgccacttccgatttgaacgatttgtaccgccgcgttattaaccgtaacaaccgt
ctgaaacgtctgttggaactgcatgcgcccgacatcatcgtccgcaacgaaaaacgtatg
ttgcaagaagcagttgactcgctgttggataacggccgtcgcggtaaagccatgaccggc
gccaacaaacgcccgctgaaatcattggcagacatgattaaaggtaaaggcggtcgcttc
cgtcaaaacctgttgggcaaacgtgtggactactccggccgttccgtgattaccgtaggc
ccatacctgcgtctgcaccaatgcggtctgccgaaaaaaatggctttggaactgttcaaa
ccgttcattttccacaaattggaaaaacaaggtctggcttccaccgttaaagcagcgaaa
aaattggtagagcaagaagtaccggaagtatgggacatcttggaagaagtcatccgcgaa
catccgattatgctgaaccgtgcgccgaccctgcaccgtttgggtattcaagcgtttgaa
cctatcttgattgaaggtaaagcgattcagttgcacccattggtgtgtgccgcgttcaac
gccgactttgacggcgaccaaatggcggtacacgttccattgagcttggaagcacaaatg
gaagcacgcacgctgatgctggcttcaaacaacgtattgtctcctgccaacggcgaaccg
attattgtaccttcccaagatatcgtattgggtctgtactacatgacccgcgaccgtatc
aatgccaaaggcgaaggcagcctgtttgccgatgtgaaagaagtgcatcgcgcataccat
accaaacaggtcgagctgggtacaaaaatcaccgtacgtctgcgcgaatgggtgaaaaac
gaagcaggtgagtttgagcctgtcgttaaccgttacgaaacaaccgtcggccgtgcattg
ttgagcgaaatcctgccgaaaggcctgccgtttgaatatgtcaacaaagcgttgaagaaa
aaagaaatttctaaactgattaacgcatcgttccgcctgtgcggcttgcgcgatacggtt
atctttgctgaccacctgatgtacaccggtttcggatttgcggcaaaaggcggtatttcc
attgccgttgacgatatggaaattccaaaagaaaaagcggccttgctggctgaagccaat
gccgaggttaaagaaatcgaagaccaataccgtcaaggtttggttaccaacggcgaacgc
tacaacaaggtggtcgatatttggggtcgtgccggcgataaaatcgctaaggcgatgatg
gacaacctgtccaaacaaaaagttatcgaccgtgccggcaacgaagtcgatcaagagtca
ttcaactccatctatatgatggcagactccggtgcccgtggttctgcggctcagattaaa
cagttgtcaggtatgcgcggtttgatggcgaaacctgacggctcgattattgaaacgccg
attacctcaaacttccgcgaaggtctgaccgtattgcaatactttattgcgacccacggt
gcgcgtaagggtttggcggataccgcattgaaaaccgcgaactccggttacctgacccgt
cgtctggtagacgtaactcaagatttggtcgttgttgaagacgattgcggtacttcagac
ggctttgttatgaaggcagtggtacaaggcggtgatgtgattgaagcattgcgcgatcgt
attttgggccgtgttactgcgtctgacgttgtcgatccgtcaagcggcgagaccttggtt
gaagccggtacgttgttgactgaaaaactggtggatatgattgaccaatccggtgtcgat
gaagtcaaagtccgtacgccgattacttgtaaaacccgccacggtttgtgcgcgcactgt
tatggtcgcgacttggcacgtggtaagctggtcaatgccggtgaggcagttggtgtgatt
gccgcccaatcaatcggcgaaccgggtacccagctgactatgcgtacgttccacatcggt
ggtgcggcatcccgtgcggcagcagccagccaagtggaagccaaatccaacggtacggca
cgattcagcagccaaatgcgttatgttgccaacaataaaggcgagttggttgtcatcggc
cgttcttgtgaagtcgtgattcacgacgatatcggccgtgaacgcgaacgccacaaagta
ccttacggtgccatcctgctggtacaagacggtatggccattaaagccggtcaaaccttg
gcaacctgggatccgcatacccgtccgatgatcaccgaacatgcaggtatggtgaaattt
gagaacgtggaagagggtgttaccgttgcgaaacaaactgacgatgtaaccggtttgtcc
actttggtggtgattgacggtaaacgccgttccagcagcgcgtccaaactgctgcgtccg
actgtaaaattgttggatgaaaacggcgtggaaatctgtattcccggtacgtccactccg
gtttcgatggcattccccgttggtgcggtgattaccgtacgcgaaggtcaggaaatcggt
aaaggcgacgtattggcgcgtatcccgcaagcctcttccaaaacccgcgacattaccggt
ggtctgccgcgcgttgccgaattgtttgaagcacgcgtgccgaaagatgccggtatgttg
gcggaaattaccggtaccgtttccttcggcaaagagaccaaaggcaagcaacgtctgatt
gttactgacgtggacggtgtagcatacgagaccttgatttccaaagagaaacaaattctg
gtacacgacggtcaagtggtaaaccgcggtgaaaccatcgtggacggagctgttgatccg
catgatattctgcgtttgcaaggtatcgaagcactggcacgctacattgtccaagaggtg
caagaggtttaccgtctgcaaggtgtgaagatttctgataaacacatcgaagtcatcatc
cgtcaaatgttgcgccgtgtgaacattgcggatgccggcgaaaccgggttcattaccgga
gagcaggtcgaacgcggcgatgtgatggcggccaatgaaaaagctttggaagaaggcaaa
gagccggcacgttacgaaaacgtattgctgggtattaccaaagcctccctgtccaccgac
agtttcatttctgccgcatcgttccaagaaacgacccgtgttctgaccgaagccgcgatt
atgggcaaacaagacgaactgcgcggtttaaaagagaacgtcatcgtcggccgcctgatt
cctgccggtaccggtttgacttaccaccgcagccgtcatcaacaatggcaagaggtggaa
caggagactgctgaaacccaagtaacggatgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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