KEGG   Nelumbo nucifera (sacred lotus): 104590707
Entry
104590707         CDS       T04131                                 
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
nnu  Nelumbo nucifera (sacred lotus)
Pathway
nnu03420  Nucleotide excision repair
nnu04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:nnu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    104590707
  09124 Replication and repair
   03420 Nucleotide excision repair
    104590707
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:nnu04121]
    104590707
   03400 DNA repair and recombination proteins [BR:nnu03400]
    104590707
Ubiquitin system [BR:nnu04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     104590707
DNA repair and recombination proteins [BR:nnu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      104590707
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      104590707
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 104590707
NCBI-ProteinID: XP_010247742
UniProt: A0A1U7Z9J1
Position
Un
AA seq 1089 aa
MSVWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG
RIATLELFRPHGEAQDFLFIATERYKFCVLQWDAETSELITRAMGDVSDRIGRPTDNGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCSKPTIVVL
YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGAGLLIPVPMPLGGVIIIGEETIVYC
SATAFKAIPTRPSITRAYGRVDADGSRYLLSDHSGLLHLLVITHEKERVTGLKIELLGET
SIASTISYLDNAFVYVGSCYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLE
RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPYDTFLVVS
FISETRILAMNLEDELEETEIEGFCSQVQTLFCHDAVHNQLVQVTANSVRLVSSTSRLLL
DEWKAPSGFSVNVATANATQVLLATGGGHLVYLEIGVGKLTEVKHAQLEYEISCLDINPV
GENPDYSQLAVVGMWTDISVRIYSLPGLDLITKEHLGGEIIPRSVLLCCFEGVSYLLCAL
GDGHLFNFLLNMSTGELTDRKKVSLGTQPITLRTFSSKSTTHVFAASDRPTVIYSSNKKL
LYSNVNLREVGHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICH
QEQTRTFAICSLKYNQSSTEETEMHFVRLLDDQTFEFISTYALDTFEYGCSIISCSFSDD
SNVYYCVGTAYVLPEENEPTKGRILVFVVEDGKLQLIVEKETKGAVYSLNAFNGKLLAAI
NQKIQLYKWMLRDDGSRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKNEEG
AIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHL
GEFVNRFRHGSLVMRLPDSDVGQIPTIIFGTVNGVIGVIASLPHDQYVFLEKLQSNLVKV
IKGVGGLSHEQWRSFNNEKRTADAKNFLDGDLIESFLDLSRSQMEEISKVMGVAMEDLCK
RVEELTRLH
NT seq 3270 nt   +upstreamnt  +downstreamnt
atgagtgtatggaactacgtggtgacggctcacaagccgacgaacgtcacgcattcgtgc
gtagggaatttcacgagtccacaggagctcaatctgatcatagcgaaatgcacacgtatt
gagattcatttgctcacacctcagggcttacagcctatgttggacgtgccaatatatgga
agaattgcaacacttgagcttttccgtcctcatggtgaggcacaagattttctatttatt
gccacagaaagatacaaattttgtgttcttcagtgggatgcagagacatctgaactcata
acaagagcaatgggggatgtctcagatcgcataggtcgacccacagacaatgggcagatt
ggtataattgatcctgattgtagattgattggcctccatctttacgatggattattcaag
gttataccatttgataataaagggcagcttaaggaagcttttaacattaggcttgaggag
cttcaagtgttggatatcaaattcctatatggttgttcaaagcctacgattgttgtcctc
taccaggataacaaagatgcacggcatgttaagacctatgaagttgcactcaaggataaa
gattttgttgagggtccatggtcacagaataatcttgataatggtgctggtctgttaata
cctgtccccatgcctcttggtggtgttattattattggagaagaaacaattgtctattgt
agtgctactgcattcaaagcaatcccaacccgaccatcgataaccagagcttatggaagg
gttgatgctgatggttctcgatacttgcttagtgaccattcagggttgcttcatttacta
gttatcacccatgagaaagaaagggtaactggactcaaaattgagctcttgggggagaca
tcaattgcatcaacaatatcatatcttgacaatgcatttgtatatgttggatcatgctat
ggagattcacagcttataaagttaaatctgcaacctgatgcaaaaggttcttatgtggaa
gtcttggaaaggtatgttaatttggggcctattgtggacttctgtgtggttgaccttgaa
aggcaaggccaaggtcaggttgtgacatgctcaggagcttataaagatggttctcttcgc
attgttcgaaatggcatagggatcaatgaacaggcatctgtggaacttcaaggcatcaaa
ggaatgtggtctttacggtcatctactgatgatccatatgacaccttcttggttgtaagc
tttatcagtgagacacgtattttggcaatgaatcttgaggatgagttggaagagactgag
attgagggtttttgttcacaagtgcagaccttgttttgccatgatgctgtgcacaatcaa
cttgtacaagtaactgcaaactctgtacgtttagtcagttctacatctagacttctgctt
gatgaatggaaagccccatcaggattttcagttaatgtggctacagctaatgcaactcag
gttttattggctactgggggtggtcatttagtttacttagaaattggtgttggaaaattg
acagaagtaaagcatgcacaattggaatatgagatatcttgccttgacataaaccctgtt
ggtgaaaaccctgactacagtcagctagctgtagttggaatgtggactgatataagtgtt
aggatatattctcttccaggcctggatctcatcacaaaggagcatttgggaggagagata
attcctcgttctgttcttttatgttgctttgaaggggtatcttacttgttgtgtgctctt
ggagatggacatctattcaactttttattgaacatgagtacaggtgagttaactgacagg
aaaaaggtctctcttgggacccagcctatcacactacgcactttctcctccaagagtacc
acccatgtatttgctgcttcagataggccgactgtcatctacagcagtaacaagaagcta
ctctacagtaatgtaaatttaagagaagttggccatatgtgtcctttcaactctgctgct
tttccagatagccttgccattgcaaaagaaggtgagctcacaattggcaccattgatgac
attcaaaagcttcatatccgctcaattcctcttggggagcatgcacgtcgtatctgtcat
caagagcagactcggacctttgcgatctgtagtttgaagtacaaccagtcgagcacagag
gaaactgaaatgcactttgtccgcttgttggatgaccagacatttgagtttatatcaact
tatgcactcgatacatttgaatatggctgctctatcatcagctgttcattctcagatgac
agtaacgtgtattactgtgttggtaccgcatatgttctacctgaggaaaatgagccaacc
aagggacgaatattggtgtttgtggttgaagatgggaagttgcagctaattgtagagaag
gaaactaaaggtgcagtttactctctcaatgccttcaatggaaagcttcttgctgctatt
aatcaaaagattcaattgtacaagtggatgttacgggatgatggttcacgtgagttgcaa
tctgagtgcggacaccatgggcacatacttgccttatatgtacaaactcgtggagatttc
attgttgtcggtgatctgatgaaatcaatctcattgttaatatataagaatgaggagggt
gcaattgaggagcgggctcgtgactacaatgcaaactggatgtcagctgttgagattctt
gatgatgacatctaccttggtgcagaaaataacttcaaccttttcactgttaggaaaaac
agtgaaggtgcaactgatgaggagcggggtcgccttgaggtggtcggagagtaccatctt
ggtgagtttgtcaaccgattccgtcatggctcccttgtcatgcgccttccagattctgat
gttggtcagattccaacaataatctttggcactgttaatggtgtgattggggtcattgcc
tcacttccccatgaccaatatgtcttcttggagaagctccagtcaaacttagtcaaggtc
ataaagggtgtaggagggctgagccatgagcagtggagatcattcaacaatgagaagaga
acagcagatgctaaaaatttcttggatggagatttaattgagtcattccttgatcttagc
cggagtcaaatggaagaaatttcaaaggtaatgggtgttgcaatggaagatctctgcaag
agagtagaagagttgacaaggcttcattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (29)   

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