KEGG   Nelumbo nucifera (sacred lotus): 104609471
Entry
104609471         CDS       T04131                                 
Name
(RefSeq) DNA-directed RNA polymerases II and IV subunit 5A
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
nnu  Nelumbo nucifera (sacred lotus)
Pathway
nnu03020  RNA polymerase
nnu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:nnu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    104609471
  09124 Replication and repair
   03420 Nucleotide excision repair
    104609471
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nnu03021]
    104609471
   03400 DNA repair and recombination proteins [BR:nnu03400]
    104609471
Transcription machinery [BR:nnu03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     104609471
  RNA polymerase III system
   RNA polymerase III
     104609471
  RNA polymerase I system
   RNA polymerase I
     104609471
DNA repair and recombination proteins [BR:nnu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      104609471
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N DNA_pol3_alpha
Other DBs
NCBI-GeneID: 104609471
NCBI-ProteinID: XP_010274103
UniProt: A0A1U8Q979
Position
Un
AA seq 206 aa
MSSSEDEITRLFRIRRTVIQMLKDRGYLVGDFELNMTRSQFVSKYGENVKREDLVINKAK
RNDSSDQIFVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTAFAKTCINEIAAK
FHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTLKETQLPRIQIGDPIARYYG
LKRGQVVKIIRPSETAGRYVTYRYVV
NT seq 621 nt   +upstreamnt  +downstreamnt
atgtcttcaagcgaagatgagatcacaaggctttttcgaatccggcgaaccgtgatacaa
atgctcaaggatcgtggttatttggttggagactttgaacttaacatgacgagatcccaa
ttcgtctctaaatatggggagaacgttaagagggaggaccttgtaatcaacaaagccaag
cgaaacgattcctccgatcagatatttgttttctttccggaggagcaaaaggttggtgtt
aaaactatgaagacctacaccaacaggatgaaatcagagaatgttttcagagcaatatta
gttgttcagcagaacttgactgcctttgccaagacatgtattaacgaaatagctgctaag
tttcatttggaagtttttcaggaggcagagctcttggtcaacattaaagagcatgttctt
gtacctgagcatcaagtgctgacgagtgaagaaaagaagactttgctcgaacggtatact
ttaaaagaaacacagcttcctcggattcaaatcggtgacccaatagctagatattatgga
ttgaagcgtgggcaagttgtgaagatcatccggccaagtgagactgcaggaagatatgtc
acttatcgctatgtcgtctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (3)   
   Pfam (3)   
All databases (26)   

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