KEGG   Neofusicoccum parvum: UCRNP2_6667
Entry
UCRNP2_6667       CDS       T03126                                 
Name
(GenBank) putative pre-mrna cleavage complex ii protein clp1 protein
  KO
K14399  polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
Organism
npa  Neofusicoccum parvum
Pathway
npa03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:npa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    UCRNP2_6667
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:npa03019]
    UCRNP2_6667
Enzymes [BR:npa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     UCRNP2_6667
Messenger RNA biogenesis [BR:npa03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     UCRNP2_6667
SSDB
Motif
Pfam: CLP1_P CLP1_N Clp1 ATP_bind_1 MMR_HSR1 SRP54 AAA_28 SRPRB
Other DBs
NCBI-ProteinID: EOD46600
UniProt: R1G5A0
Position
Unknown
AA seq 481 aa
MSLPGLSLPGLSMSAPPPADMPPPSAPRLQELSPGAEYRFEVPFNSTLTVKLLNGTAECF
GTELACNAKEPYLFRPGTKAAIYTWHGCRLQVEGDVESEYLAEETPMVEYANVHFALEKL
RDKAEHEGGGGGGGDKPIGPRVLVVGPENAGKTSLVRLLAAYGVKMGRQPVVVNLDPRQG
MLSPPGALATATFASVLDVEEGWGSSPINGPSPVPVKMPLVYHFGLGSPDDNVRMFRGLV
TRLALAVTSRLGEDEEARKSGCLIDTPGVLSVDKKGVYENIQHVASEFSVNVILVLGSER
LFSDLSRRFSRTGDDAVQVVKLDKSGGCVDRDENYMKALRQSQVRSYFFGHGYTTLSPHT
HRVDFNSLHIYRTVDTSASNPASSFLPGGGEADDAESGSGRLYERIKPSLMIQNGLLAIT
NAEPSDSHESIRDSSVLGYVYIADVDEAKQNVKLLAPLSGQIPRSAMILGNWPEDVAGLV
G
NT seq 1446 nt   +upstreamnt  +downstreamnt
atgtcgctcccgggcctctcgctgccgggcctgtccatgtccgcgccgccgccggccgac
atgccgccgccgtctgccccgcgcctgcaggagctgtcgcccggcgccgagtaccgcttc
gaggtgcccttcaactcgacgctgacggtcaagctcctcaacggcaccgccgagtgcttc
ggcaccgagctggcctgcaacgccaaggagccctacctcttccgcccgggcaccaaggcc
gcgatctacacatggcacggctgccgcctgcaggtggagggcgacgtcgagagcgagtac
ctggccgaggagacgccaatggtcgagtacgcgaacgtgcacttcgcgctggagaagctg
cgggacaaggccgagcacgaaggcggcggcggcggcggcggcgacaagcccatcggcccg
cgcgtcctggtcgtggggccggagaacgcgggcaagacgagcctggtgcggctgctggcg
gcgtacggcgtcaagatggggcggcagccggtggtcgtcaacctggacccgcggcagggc
atgctgagcccgccgggcgcgctggcgaccgcgacgttcgcgtcggtgctggacgtcgag
gagggctggggcagcagcccgatcaacggacccagcccggtgccggtcaagatgccgctg
gtctaccactttggcctcggcagcccggacgacaacgtcaggatgttcaggggcctggtg
acgcgcttggcgctggcggtgacgagcaggttgggcgaggacgaggaggccaggaagtcg
ggctgtctgattgatactcccggcgtgctgagcgtggataagaagggcgtgtatgagaat
atacagcatgttgcctcggagttctcagtgaacgtcatcctcgtacttggatccgaacgt
ctcttcagcgacctatcccgacgcttctcgcgcaccggcgacgatgccgtccaagtcgtc
aagctcgacaaatccggtggctgcgtcgatcgcgatgagaactacatgaaggcgctcaga
caatcgcaagtccggtcctacttcttcggccacgggtatacgacgctaagcccacacacg
caccgcgtcgacttcaattccctacatatctaccgcacagtcgacacatccgcatccaac
cctgcatcatccttcctgcccggtggcggtgaggcagacgacgccgagtccggctcgggc
cgcctctacgagagaattaaaccgtcgctcatgatccagaacggcctactcgccatcact
aacgccgaaccgtcagacagccatgagagcatccgcgacagcagcgtactgggctacgtg
tacatcgctgacgttgacgaggcgaagcagaatgtgaagctgctagcgccgctgagcggc
cagatcccgcgcagcgccatgatcttgggcaattggccggaggacgttgctgggttggtg
gggtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (34)   

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