KEGG   Novosphingobium pentaromativorans: JI59_11605
Entry
JI59_11605        CDS       T03399                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
npn  Novosphingobium pentaromativorans
Pathway
npn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:npn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    JI59_11605
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:npn03021]
    JI59_11605
   03019 Messenger RNA biogenesis [BR:npn03019]
    JI59_11605
Transcription machinery [BR:npn03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     JI59_11605
Messenger RNA biogenesis [BR:npn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     JI59_11605
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB Spore_III_AA NACHT ATPase_2 AAA_22 AAA_25 AAA GpA_ATPase AAA_14 AAA_16
Other DBs
NCBI-ProteinID: AIT80380
UniProt: G6EBH4
Position
complement(2412927..2414183)
AA seq 418 aa
MHLKELKRKTPAELVEMAEEMGVEGASTMRRQDLMFGILKEVAEDGEEIIGQGTIEVLPD
GFGFLRSPEANYLAGPDDIYVSPNQVRKWGLRTGDTVEGEIRAPKDGERYFAITKLMSVN
YDDPDVVRHRVNFDNLTPLYPDERLKLDSLDPTVKDKSARVIDLISPQGKGQRALIVAPP
RTGKTVLLQNIAKAITDNHPEVFLLVLLVDERPEEVTDMQRSVKGEVISSTFDEPAQRHV
QVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPALDV
GKSGTRKEELLVPKDQLSKMWVLRRILMQMGTVDAMEFLLDKMKDSKTNEDFFATMNQ
NT seq 1257 nt   +upstreamnt  +downstreamnt
atgcatctgaaagaactgaaaagaaaaaccccggccgagctcgtggagatggccgaggaa
atgggagtagaaggcgcttcgacgatgcgccgccaggacctgatgttcggcattctcaag
gaagtcgccgaagacggtgaggaaatcatcggccagggcacgatcgaagtgctgcccgac
ggtttcggcttcctgcgcagccccgaggcgaactatctcgccggcccggacgacatctac
gtctcgcccaaccaggtccgcaaatggggcctgcgtaccggcgataccgtggaaggcgag
atccgcgctcccaaggacggtgagcgctacttcgccatcaccaagctgatgagcgtcaac
tatgacgatcccgacgtggtccgccaccgcgtcaacttcgacaacctgacgccgctctat
cccgacgaacgtctcaagctcgacagcctcgacccgacggtcaaggacaagtcggcccgc
gtgatcgatctgatcagcccgcaaggcaagggccagcgcgccctgatcgtcgctccgccg
cgcaccggtaagaccgtcctgctgcagaacatcgccaaggcgatcaccgacaaccatccg
gaagtcttcctgctggtcctgctcgtcgacgagcgcccagaagaagtgaccgacatgcag
cgctcggtgaagggcgaggtcatctcctcgaccttcgacgaaccggcccagcgccacgtg
caggtggcggaaatggtgatcgagaaggccaagcgtctcgtcgagcacaagcgcgacgtc
gtcatcctgctcgattcgatcactcgcctcggccgcgcctacaacaccgtcgtgcccagc
tcgggcaaggtgctgaccggcggtgtcgacgcaaacgccctgcagcgccccaagcgcttc
ttcggcgcggcgcgcaacatcgaggagggtggttcgctctcgatcatcgccaccgccttg
atcgataccggcagccgcatggacgaagtcatcttcgaagaattcaagggcaccggtaac
tcggaaatcgtccttgaccgcaaggtcgccgacaagcgcatcttccctgcactggacgtc
ggcaagtccggcacccgcaaggaagagctgctggttcccaaggaccagctatccaagatg
tgggtcctgcgccgcatcctgatgcagatgggcacagtcgacgcgatggaattccttctc
gacaagatgaaggattccaagacaaacgaggacttcttcgcgacgatgaaccagtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (22)   

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