KEGG   Nanorana parkeri (Xizang Plateau frog): 108788253
Entry
108788253         CDS       T04897                                 
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
npr  Nanorana parkeri (Xizang Plateau frog)
Brite
KEGG Orthology (KO) [BR:npr00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:npr01009]
    108788253 (HDAC6)
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:npr03019]
    108788253 (HDAC6)
   04131 Membrane trafficking [BR:npr04131]
    108788253 (HDAC6)
   03036 Chromosome and associated proteins [BR:npr03036]
    108788253 (HDAC6)
Enzymes [BR:npr01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     108788253 (HDAC6)
Protein phosphatases and associated proteins [BR:npr01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     108788253 (HDAC6)
Messenger RNA biogenesis [BR:npr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     108788253 (HDAC6)
Membrane trafficking [BR:npr04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    108788253 (HDAC6)
Chromosome and associated proteins [BR:npr03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     108788253 (HDAC6)
SSDB
Motif
Pfam: Hist_deacetyl zf-UBP
Other DBs
NCBI-GeneID: 108788253
NCBI-ProteinID: XP_018413494
Position
Unknown
AA seq 1236 aa
MASPQERKSPEARGTSPPITTTKKPGKKGTSPPQCGPTLQEVKKRGQRIRKTPEMDICDQ
LDMLRLNRDLPAAGTGLVYDDRLTLPYCLWDDKFPEGPARILAVREKLAQYGLVDRCISV
PAREASDADLLLVHSPDFVELMKSTQTMTEEELRELSDRYDSVFLHPASFTTSCLAAGSV
LQLVDKVMKGEIRNGLAVVRPPGHHSHTDKMDGYCMFNQLAIAAKYAQRNHGVKRILIVD
WDIHHGQGTQFIFEHDPSVLYFSIHRYENGEFWPHLVESSSSAVGKDRGERYNINVPWNK
IAMTDADYITAFLHLLLPISYEFQPHLVLVAAGFDSVVGDPKGEMAATPACFAHLTHLLM
SLAEGRLILSLEGGYNLRSMSEGVCASLKILLGDPCPSLSQPFAPCDSALESISGAFCVH
RKYWRSLQEQDFTLKQERKAKETSQASLADTSEDTLTDVLDATMKEVMRKMPDQRTGLVY
DERMMEHYNMWDSGHPEVPQRIARIYLRHKEMGLLDRCVRLSQCAATKEQLQMCHSLPYI
DKIEGCSRLKPRDLHRMGDEYNSIYINNKSYSSACLAAGSTFSVVEAVLTGKVQNGVCIV
RPPGHHAEPGSACGFCFFNNAALAARYAQSLQNPSEPQLRVMILDWDIHHGNGTQHIFQE
DDSVLYVSIHRYDDGLFFPSSEDAAHDKVGVGLGEGFNVNIPWNGSKMGDSEYLLAFHRI
VMPIAYEFNPQLVLISAGFDAARGDPLGGCRVSPEGYAHMTHLLMGLAGGKVVVILEGGY
NLTSISESMSMCTRTLLGDPPPRLSDLHPPRPSALRTISNVLSVHNKYWCSLRLKVELPP
PSEISKEAHWTPQNVQSSPQLTTISPGRNIETQCPQELDLTGSKADDDSLNPSPEIVEVK
SPPSVAFSNGSIDSVSSIDSCSVSFSVENNMETPSSEKSQIMYRVGESSPQKSDSVKMAK
HELKETLVDKDDVFNPLLPNLAEVEKKEELVVEMEAVGPHSVHRDSNDGESLVTVMEVQV
SNRTPDILMSARTESSVEELVSDLKLEDSKDPSTFSIREGDSEPVAGARKTIVPFLQQVA
DGAEAASVSSPDTHLEENLLSEAASGCPASCYQIDVEPSLEFSGELFTVTPLPWCPHLES
VCEMPPCGLEVTQPCVACGTDIENWVCLTCYAVLCGRYVSQHMISHGVSSGHNLVLSFSD
LSVWCYSCDAYIHNEVLIPAKQSAYYSKFGEEMPGT
NT seq 3711 nt   +upstreamnt  +downstreamnt
atggcatctccccaggagcgaaagtctccagaagctcgaggcacgtcccctcccatcact
accacgaaaaagcctgggaagaaaggaacctcccccccccagtgtggtccaacgctgcag
gaagtaaagaagagagggcaacgaatacggaagacaccggaaatggacatttgtgaccaa
ctagatatgctgcgcctgaacagagatctacccgcagcagggactggccttgtatatgat
gaccgactgactctgccatactgtctttgggatgacaaattcccagagggtcctgcacgc
atcttggcagttagagagaagctggcacagtatggtctggtggatcgctgtatttcagta
cccgctagagaggcgtctgatgcagatctcctgcttgttcacagtccggactttgtggag
ctgatgaagtccactcaaacgatgaccgaggaagaactcagagagctgtcagatcgctac
gattctgttttcctgcaccctgcttcgttcactacatcctgcttggctgccggctctgtc
ttgcagttagttgataaagttatgaagggagagatccgcaatgggttagcagtggtcagg
cctcctggacaccactcccacactgacaaaatggacggttactgcatgtttaaccaattg
gccattgcggccaaatacgctcagcgcaatcacggggtaaagcggatactgatcgtagac
tgggacatccatcacggtcagggaacacagttcatatttgaacacgatcccagtgtgttg
tatttttccattcaccgctacgaaaatggagaattctggccccatcttgtggagtcttcc
agcagcgcagtggggaaggatcgtggggagcgatataatatcaacgtgccctggaataag
attgcaatgacagatgctgattatatcacagcatttcttcacctcctcctcccgatctct
tatgagtttcagccacatcttgtattagtagcagctggatttgactctgtggtgggagac
ccaaagggagagatggctgccactccagcatgctttgctcacctgacacacctgctcatg
tccttggctgaaggaagacttattttgtcccttgagggagggtataacttgcgctctatg
tcggaaggggtctgcgcttccctaaagattctcctcggagacccttgtccaagtttgtct
cagccctttgccccctgtgatagtgccctggaatccatctctggtgccttctgtgtccat
aggaaatattggcggagcctgcaggaacaagatttcaccttaaagcaggaaagaaaagca
aaggaaaccagtcaggcttcactggcagacacatctgaagatactctaacagatgtgctg
gatgcaacgatgaaggaagtgatgaggaagatgccggatcagcgcactggcctggtgtat
gatgagcgcatgatggaacattacaacatgtgggacagtggccaccctgaggttccacaa
agaattgcccgcatatacctacgtcataaggagatggggctgttagatcgctgcgttcgc
ctctcccaatgtgctgcaaccaaagaacagctacaaatgtgccacagtcttccctacatt
gataagatagaagggtgttcccgactgaaacccagggacctgcatagaatgggagatgag
tataactccatctacatcaacaacaagtcttacagcagtgcctgtctggctgccggctcg
acattcagtgttgtggaagctgtccttacagggaaggttcaaaatggagtctgtatcgtt
cgcccaccaggtcaccatgcagagccaggttcagcttgtggtttctgcttcttcaacaat
gccgcccttgctgcacgatatgcccagagcctgcagaacccgtctgaacctcaattaagg
gtaatgattctagactgggacatccaccacggcaacggaacacagcacattttccaggag
gatgatagtgtgctgtatgtgtccatccatcgatatgatgatggcctcttcttcccatct
tctgaggatgctgcacatgacaaggttggcgtcggtcttggagaagggttcaatgtgaac
atcccgtggaatggtagcaagatgggtgattcagagtacttgctggcctttcataggatt
gtcatgcctattgcttatgagtttaatccgcagctggttttgatatctgctggttttgac
gctgctcgtggagacccacttggaggctgccgtgtttctccggaaggctacgcccacatg
acacaccttctgatgggtctggcaggtggcaaggtggtggtcattttggagggtggctat
aatctgacctccatttcagaatccatgtcaatgtgtactcgtacacttcttggagatccc
cctcctcgcttgtctgacttgcatcctccccgtccttcagcactgcgtacaatctcaaat
gtcctaagtgtccataacaaatactggtgcagcctcaggttaaaagttgagctccctcca
ccctctgagatatcaaaggaggcacattggactccacagaacgtgcagtcatccccgcaa
ctgacaaccatctcccctggaaggaatattgaaacacagtgtccccaggaattagatttg
actggttccaaagctgatgatgatagtctgaaccccagccctgaaattgtggaggtgaaa
agtccaccgtcagtagcctttagtaacggctcaattgatagtgtctccagcatcgacagt
tgttctgtatcattctctgtagaaaacaatatggaaacaccatcatcagagaaaagtcag
atcatgtaccgtgtcggggagtcttcacctcaaaaatcagacagtgttaaaatggctaaa
catgaactgaaagagaccttggttgataaggatgatgtctttaatcccctcttgcctaac
ttagctgaagtagagaagaaggaagagttggtggtagagatggaggctgttggaccacac
tcagtgcacagggattctaatgatggagagtcgctggtaacagtaatggaagtccaggtt
tcaaaccgaacaccagacattctgatgtctgccaggacagagagctctgtggaagaactt
gtaagtgacttgaagctggaagatagcaaagacccatcaaccttcagcattagagagggt
gacagtgaacccgttgctggggctagaaagacgattgttcccttcctgcagcaagtggct
gatggtgcagaagcagcttctgtgagttctccagatactcacttggaggagaatttactc
tcagaagctgccagtggctgcccagcctcatgttaccagatagatgtggagccatcactg
gaattctctggggagttgtttacggtgacgccacttccctggtgtcctcatctggagtca
gtgtgtgagatgcccccttgcgggctggaggtgacacagccgtgcgttgcttgtggtaca
gacatagagaactgggtgtgcctgacatgttatgcggttctgtgtgggaggtatgtctct
cagcacatgatatctcatggagtctcgtccggtcacaatcttgttctcagcttctctgac
ctgtctgtctggtgttacagctgtgatgcctatatccataatgaggttctgattccagca
aaacagtcggcctactactccaagtttggcgaggaaatgccaggaacataa

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Ontology (6)   
   KEGG BRITE (6)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (97)   
   KEGG ORTHOLOGY (1)   
   RefGene (93)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (109)   

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