KEGG   Nanorana parkeri (Xizang Plateau frog): 108800931
Entry
108800931         CDS       T04897                                 
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
  KO
K12854  pre-mRNA-splicing helicase BRR2 [EC:5.6.2.6]
Organism
npr  Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:npr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108800931 (SNRNP200)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:npr03041]
    108800931 (SNRNP200)
Enzymes [BR:npr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     108800931 (SNRNP200)
Spliceosome [BR:npr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    108800931 (SNRNP200)
 Complex C
   U5 SnRNP specific factors
    108800931 (SNRNP200)
SSDB
Motif
Pfam: Sec63 DEAD Helicase_PWI ResIII Helicase_C BRR2_plug AAA_22 AAA_30 PhoH SWI2_SNF2 Sigma54_activ_2 DUF603
Other DBs
NCBI-GeneID: 108800931
NCBI-ProteinID: XP_018428417
Position
Unknown
AA seq 2134 aa
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQKTK
PQMQEERRAKRRKRDEDRHDINKMKGFTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNDKLRDKDRRREVEQLLGQTDETRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEVGDEDVYGEVRDEASDDDVDGDEAVVHGTL
SANLVSSGELMSTKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTAGDDR
ECENQLVLLLGFNTFDFIKILRQHRMMILYCTLLASAQSEAEKERIMSKMEADSELSKYL
YQLQETEKEDLIREERTRRERVRQSRVDTDLESMEIEQDNFTPRQVLDLEDLVFAQGSHF
MANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSDEQLVPVEKLPKYAQAGFDGFKTLN
RIQSKLFKAAMETDENLLLCAPTGAGKTNVALMCMLREIGKHINVDGTINVDNFKIIYIA
PMRSLVQEMVGNFSKRLSTYGITVAELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGE
RTYTQLVCLIILDEIHLLHDDRGPVLESLVARAIRNIELTQEDVRLVGLSATLPNYEDVA
TFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTSRAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYSF
AIHHAGMSRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDMLN
AEVVLGNVQTAKDAVNWLGYTYLYIRMLRSPNLYGISHDDLKIDPLLEQRRLDLIHTAGL
MLDKNNLAKYDKKTGNFQVTELGRIASHYYITNESMQTYNQLLKPTLSEIELFRVFSLSS
EFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMV
YVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFKKLPEEVVKK
IEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLDLAVHLQPITRSTLKVEL
TITPDFQWDDKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEPL
PPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQ
DKFPFFNPIQTQVFNTIYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPM
EALAEQVFMNWFEKFQDRLYKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQR
KNVQNVSLFVVDETHLIGGSNGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAH
WLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHSIVKHSPKKPIIVF
VPSRKQTRLTAIDILTTCASDVQRQRFLHCTEKDLTPYLDKLSDNTLKETLLNGVGYLHE
GLSTLERRIVEQLFNSGAVQVVVASRSLCWGLNIAAHLVIIMDTQYYNGKIHAYVDYPIY
DVLQMVGYANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVT
KTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVEQTLSDLEQSKCI
SVEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYESIPIRH
REDNLLRQLAQKVPHKLTNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPYFTSEHIKRCTDKGVESV
FDIMEMEDEERTELLQLTDSQMADVARFCNRYPNIELSYEVAEKDAIRSGGAVVVLVQLE
REEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGTH
NYTLYFMSDAYMGCDQEYKFSVDVKEAESDSDSD
NT seq 6405 nt   +upstreamnt  +downstreamnt
atggcggatgtaactgcccgtagcctgcagtatgagtacaaggcgaactctaaccttgta
cttcaagcggatcgttctttgatcgaccgaacccggcgtgatgagcccactggagaggtg
ttatccttggtggggaagttggaggggacccgtatgggtgacaaggctcaaaaaaccaaa
ccacagatgcaggaagaaagacgggctaagaggaggaagcgagatgaagacagacatgac
ataaacaagatgaagggattcaccctcttgtcagaaggcattgatgaaatggtgggaatt
atatacaagcccaaaaccaaagagactcgtgagacatatgaagttctactcagcttcatc
caggctgctttgggagaccagccccgagatatcctgtgtggtgcagcagatgaggttttg
gctgtgctaaagaatgacaaactacgagataaggatagaagacgagaggtagaacaactc
cttggacagactgatgaaacacgttaccatgtgctggtcaacttgggaaaaaagattaca
gattacggaggggacaaagaaattcagaatatggatgataatatagatgagacatatgga
gtcaatgtgcagtttgagtctgatgaggaggttggagatgaagatgtgtatggagaggtg
agagatgaggcttccgacgatgacgtggatggagatgaagctgttgtacatgggacactc
tcagccaatcttgtgtcttctggagagctgatgagtactaagaaaaaggatcttcaccct
cgcgatatcgatgctttctggttgcaaaggcagctcagcagattttatgatgatgctatt
gtctcccagaagaaagctgatgaggttcttgaaatcttaaagactgcaggagatgatcgt
gaatgtgaaaatcagttggtcttgctgctggggttcaatacatttgacttcattaaaatt
ttgaggcagcatcgaatgatgattctctactgtacactcttggccagtgctcaaagtgaa
gcagaaaaagagaggattatgagtaaaatggaggcagactccgagctgtccaaatatctg
tatcagctgcaggagactgagaaggaagatctgattcgggaggaacgcacacgtcgtgag
agagtgagacaatcacgagtggacacagacttggaaagtatggagatagagcaagataac
ttcacacctcgccaagtcttggatttggaagatttggtctttgctcaaggtagtcacttc
atggccaacaagcgctgtcagctgccagatggttcattcagacgtcaaaggaaaggctat
gaagaagtgcacgtacctgccctcaaaccaaaaccgtttggttcagatgagcaactagta
cctgttgagaaacttccaaaatatgcccaggctggatttgatggctttaagactttgaac
agaatacagagcaaactctttaaagctgcaatggaaaccgatgaaaatctgcttctgtgc
gcccctaccggagctggaaaaacaaacgtagctctaatgtgcatgctgcgggaaattggg
aagcacataaatgtggatggcacaatcaacgtggacaactttaaaattatttacattgca
cccatgcgatccctggtacaggaaatggtgggaaatttcagcaagaggttgtctacgtat
ggtattacagtagctgagctgactggtgatcaccagctgtgtaaggaagagataaacgcc
acccagattattgtctgcacaccagagaagtgggacattatcacccgtaaaggaggagag
cgaacttacactcagcttgtctgtctaattatcctggatgaaatccaccttttgcatgat
gaccgaggacctgtgctggaatccttggttgcccgagctattcgtaacatagaactgacc
caagaagatgtgaggttggttggccttagtgccactttgccaaattatgaggatgtagcc
actttccttcgtgtggaccctgccaaaggacttttctactttgacaacagtttccgacca
gtacctctggagcagacttatgttgggatcacagagaagaaagctatcaaacgtttccag
atcatgaatgaaattgtatatgagaagatcatggagcatgctgggaaaaaccaggtgctg
gtgttcgtccattctaggaaagaaactggtaagacatctagagccatcagggacatgtgc
ctggaaaaggatacgttgggccttttcttgagggaaggatctgcttctactgaggtgctg
cgcacagaggctgagcaatgcaagaacctggagctgaaagacctcctgccatacagtttt
gctattcaccatgcaggaatgagtcgtgtagatagaactttggtggaggatctgtttgct
gacaagcatatacaggttctggtttccacagctacactggcctggggtgtcaatctccca
gctcacactgtcatcataaaaggaactcaggtttacagtccagaaaagggcagatggacc
gagctgggagcgctggatatcctacagatgctgggtagagctgggcgtcctcagtatgac
acaaagggtgaaggtatcctcatcacatctcatggagagctgcagtattatctgtcccta
cttaaccaacagttgcctattgagagtcaaatggtggccaaactcccagacatgctgaac
gcagaggtggtcctgggaaatgtgcagactgcaaaggatgctgtgaactggctgggttac
acttacctgtacattcgtatgcttcgttcacccaatctgtatggaatttcacatgatgat
ctgaaaattgaccccttattggaacagagacggctggatttgatccacacagcaggtctt
atgctggataagaacaatttggcaaagtatgataagaagacgggcaatttccaggtgact
gaattgggccgtattgccagtcattactacatcactaatgagtctatgcagacatataac
cagctcctaaagccaactctcagtgagatcgagctgttccgtgtcttctcattgtcttct
gagttcaagaatatcacagtcagagaggaagagaaacttgagctacagaagctgctggaa
agggtaccaatacccgtaaaggagagcatagaggagccaagtgctaagatcaatgtcttg
ctccaggcctttatctcacagctgaaattggaaggttttgcgctaatggcagacatggtg
tatgtcacgcagtctgcaggtcgactcatgcgtgcaatatttgaaattgtgttaaacaga
ggatgggcacagctcacggacaagactttaaatctttgcaagatgatcgataagagaatg
tggcagtccatgtgtcctctccgccagttcaagaaactgccagaagaagtggtgaagaag
attgaaaagaaaaacttcccttttgagcgtttatatgatctcaatcataatgaaataggt
gagctgatccgaatgcccaaaatgggaaagaccatccataaatatgtgcacctattcccc
aagctggatctggcagtgcacctacagcccatcactcgctccaccctaaaagtagagctg
acaatcacccctgacttccagtgggatgacaaggttcatggatcttctgaagctttctgg
attctggtggaagatgttgacagtgaagtgattcttcatcatgagtattttcttctcaaa
gctaaatatgcccaggacgagcatcttgttacattctttgtgccagtgtttgagcctctt
cctccacaatacttcatccgagttgtgtctgatcgctggctatcctgtgaaacacaactg
ccagtgtccttccgccacttgatcctgcctgagaaatacccaccgcctacagaactgctg
gaccttcagcccctgcctgtctctgctttgagaaacagtgcatttgagagtctttatcag
gacaaattcccattttttaaccccatacaaacccaagtctttaacaccatatataacagt
gatgacaatgtgtttgtgggagctcctactggcagtgggaagactatatgtgctgaattt
gccattcttcgaatgttgctgcagaactcggagggacgctgcgtatatatcactcctatg
gaggctctggctgagcaggtgttcatgaactggtttgagaagttccaggataggctgtat
aagaaggtcgtcttgctgactggtgagactagcacagacttgaaattattggggaaagga
aacatcataatcagcaccccagagaagtgggacatactgtccagaagatggaaacagcga
aagaatgtgcagaatgttagcttgtttgtcgtggatgagacccatctcattggtggatcc
aacgggcctgtgctggaggtcatctgttcccgtatgcgctatatctcctctcagatcgag
aggccgatccgcattgtggctctcagttcctccttgtcgaatgctaaagacgtggctcat
tggctgggatgcagcgccacctcaacattcaacttccatcccaatgtgagacctgtccca
ttagaattgcacatacagggttttaacatcagtcacacgcagaccagactgctctccatg
gccaagcctgtgtaccattccatcgtgaaacattcaccaaagaaacccattattgttttt
gttccatcaagaaagcagactcgactcacagctattgacatactcactacatgtgcctct
gatgtgcagcgacaaaggttcctgcactgcacagagaaggatctgactccataccttgac
aaactaagtgataacaccttgaaagagacccttctgaatggcgtgggttatctacacgag
ggtctctcgactttggagaggcgaattgttgagcagctcttcaactcgggggcagtacaa
gtagttgtagcatctcgcagtctttgctggggtctcaacattgccgctcacctggtcatc
atcatggacactcagtactataacgggaaaatccatgcgtatgttgattacccaatctat
gatgttcttcagatggtagggtatgctaacaggcccttgcaggatgatgaggggcgatgt
gtcattatgtgtcaaggatcaaagaaggatttctttaagaagtttctgtatgagcctctg
cccgtggaatctcatcttgatcattgcttacatgaccacttcaatgctgaaattgtcacc
aagaccattgagaacaaacaggacgctgtggattatctgacctggacattcctgtacaga
agaatgacacagaaccccaactactacaatctgcagggtgtttcacacagacatctgtca
gatcacttgtcagagctggtggaacagacgctcagtgacctagaacagtccaagtgcatt
agcgttgaagatgaaatggatgtggcaccgcttaatttgggcatgattgcagcctattat
tatatcaactacaccacaatcgagctgttcagcatgtctttgaatgccaagaccaaggta
cggggattgatcgagatcatttcaaatgctgcagagtacgaaagtatacccatccgccac
cgggaggacaacctgctgcgccagctggcacagaaagttccccacaaactgaccaatccc
aaattcaatgatccccatgtgaagaccaacctgctgctccaggctcatctctctcgcatg
cagctgagtgcagagcttcagtcggacacagaagagatccttagtaaggcaatccggcta
atccaggcatgtgtggatgtgctctccagtaatggctggctcagtccagcgctcgctgct
atggaattggcacagatggtcacacaagctatgtggtctaaggactcttaccttaaacag
ttgccatactttacttctgagcacatcaaaagatgcacagataagggagtggaaagtgtg
tttgatatcatggagatggaggatgaagaacgtacagaacttctgcaactcaccgatagc
cagatggcggatgtggccaggttctgtaaccgctatcctaatattgagctgtcttatgag
gtggcagagaaagatgctattaggagtggtggtgccgtagtggtgcttgtgcagctggaa
cgagaggaggaagttacaggtcctgtaattgctccgttattcccccagaaacgtgaagaa
ggttggtgggttgtgattggagatgccaaatccaacagcctaatctccatcaagaggttg
acattacagcagaaagcaaaggtaaaattggattttgtggcaccagccacaggaacacat
aactacaccctgtattttatgagcgacgcttacatgggctgtgaccaggagtacaagttc
agtgtcgatgtaaaagaggcagagagcgacagtgactccgattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (56)   

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