KEGG   Nicotiana sylvestris (wood tobacco): 104227356
Entry
104227356         CDS       T05026                                 
Name
(RefSeq) pre-mRNA-splicing factor 38
  KO
K12849  pre-mRNA-splicing factor 38A
Organism
nsy  Nicotiana sylvestris (wood tobacco)
Pathway
nsy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nsy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104227356
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:nsy03041]
    104227356
Spliceosome [BR:nsy03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    104227356
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    104227356
SSDB
Motif
Pfam: PRP38 PRP38_assoc HIND
Other DBs
NCBI-GeneID: 104227356
NCBI-ProteinID: XP_009777884
UniProt: A0A1U7WT75
Position
Unknown
AA seq 382 aa
MANRTDPLAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
FGGNRKPTPFICLVMKMLQIQPEKDIVVEFIKNEDYKYVRALGAFYLRITGTDIDIYRYL
EPLYNDYRKLRRKLADGQYALTHVDEYIDELLTTDYSCDIALPRIKKRSQLEHNGQLEPR
RSALEDDFEEEEEKDEDEPLATGLDDEHEKDYYRGGSPTRERDRDRRRDSHRYRDRDYDR
DRDYDRDYERDRDYDRERGRRDRDRDRDRDRHRLRDDKDYGRERDRERDREARERDRRDR
ERGRHRSYSRSRSRSRDRKDRDDDRRKRHARSSASPARDEPKKKKEKKEKKEKKDDGTDH
PDPEIAEANRLRASLGLKPLKL
NT seq 1149 nt   +upstreamnt  +downstreamnt
atggcgaatcgcaccgatccattggcaaagagcattaggggaacgaaccctcagaatctg
gtggagaaaattctcaggtctaaaatataccaaaacacctactggaaagaacaatgtttc
gggttgacagcagaaaccctagtcgacaaggccatggaactcgaccacctcggtggtaca
ttcggcggcaatcgaaaacccacaccctttatatgccttgtcatgaagatgctccaaatc
cagcctgaaaaagatatagttgtggagttcataaaaaacgaagattacaagtatgttcgt
gctcttggggctttttatttgcggattacgggtacggatatcgatatttatcgatacctt
gagcctctctacaatgattatcggaagctcagacgtaaattagctgatgggcagtatgca
ctgacacacgtggatgagtatattgacgagcttctgacgacagattactcttgtgatatt
gctttgcctcgcatcaagaaaagatcgcaattggaacataatggacagctggaacctcgg
agaagtgcattggaagatgactttgaagaggaagaggaaaaggatgaagatgaaccactt
gccactggattagacgatgagcatgaaaaggattactatcgtgggggaagtccaactagg
gagagagatcgggatagaagacgagatagtcacagatacagggatcgtgactatgataga
gatcgagattatgatagagactatgaaagagatcgtgattatgacagggaacgtggaaga
cgtgacagggatagagacagggaccgggaccgtcatcgcctcagagacgataaggactat
ggtcgagagagggatcgggaaagggacagggaggccagagaacgtgatagacgtgaccgt
gagcgcggtcgacacaggagttattctaggagcagaagtagaagcagagaccgtaaagac
cgtgatgatgatcgtcgtaaaaggcatgctcgcagcagtgctagtcctgctcgtgatgaa
cccaagaagaagaaggagaagaaggagaagaaagaaaagaaagatgatggaacagatcat
ccagatccagagatagcagaagccaacaggcttagggcatcgcttgggttaaagcctttg
aagctatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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