KEGG   Nicotiana sylvestris (wood tobacco): 104239569
Entry
104239569         CDS       T05026                                 
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
Organism
nsy  Nicotiana sylvestris (wood tobacco)
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase DEAD UvrD-helicase Helicase_RecD nSTAND3 ATPase PhoH AAA_16 SRP54 AAA_22 Ribosomal_S13_N AAA_25 AAA AAA_32
Other DBs
NCBI-GeneID: 104239569
NCBI-ProteinID: XP_009792531
UniProt: A0A1U7XSD4
Position
Unknown
AA seq 1272 aa
MNTQPNNLYDTASQPDTGNDAYTFLEFNTQGEEFDYPEFQELSQPIRSSAWPTPSDSLVS
EAPDRPPSSDASPSKKSRGGNGGNGSGGGGNGNVIGSSSNNQAASVVVDALAAGMSGLNF
EETVDDEGFEYGKGDFGVEHACKYCGVTNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNH
LVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKAESVVVLLCREPCLSVNAL
KDMNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDATLED
LEKPGVDDEPQPVALKYEDAYQYQNIFAPLIKLEADYDKMMKESQSKDNLTIRWDIGLNK
KRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVVKLTAQEEVALELRVSQG
VPVDVTHGLSVDFVWKSTSFDRMQSAMKTFAVDETSVSGYIYHHLLGHEVEMQMVRNALP
RRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC
APSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHIQVRHLDTSEKSELYKLQ
QLKDEQGELSSSDEKKYKALKRATEREIAQSADVICCTCVGAGDPRLANFRFRQVLIDES
TQATEPECLIPLVLGAKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVFLGVKPIRL
QVQYRMHPALSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEIS
ASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLY
KEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKV
LSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFFGGGPGIPGDSF
GSASGPNADRRNSRSRGSYMAPGVPNGTQKPGVHPAGYPMPRVPFPPYHGGPPQPYAIPT
RGAVHGPVGAVPHVPQPGSRGFGAGRGNANAPIGSHLPHHQGAQQQAGSLGSNFNFPALE
NPNSQPSVGGPLSQPGYASNMGIQGPGQTFRDGYSMGSMSQDFVGDDFKSQGSHVPYNVA
DFSTQASQSGYAVDYVTQGAQAGFPGNFLNQSSQSGYSRFGSGNEFMSQDYMAHGSQGLF
TQAGYNNPSQDDGPQNHFGMSNASLQSQSSLNPLYSQPFAHYNTQPFNMQSQPQQQAPQG
QGFQNQKLHYNS
NT seq 3819 nt   +upstreamnt  +downstreamnt
atgaatactcagccgaacaatctctacgatacggcgtcgcagccggacaccgggaacgat
gcatacacattcctcgaattcaacacgcagggcgaagaattcgattatcctgaatttcaa
gagctttcacagccaattcgatcgtcagcgtggcctacgccgtcggattctctggtttcc
gaagcacccgatcggcctccgtcttctgacgcctctccgtcaaaaaaatcccgcggtgga
aacggcggaaatggctctggtggtggcgggaacggaaatgttattggtagtagtagtaat
aatcaggcggcatcggtggtggtggatgcgttggcggcggggatgagcggattgaatttt
gaggagacggtggatgatgagggttttgagtacggaaagggggattttggtgttgagcat
gcttgtaagtactgtggagtgacgaatcctgcttgtgtagttaggtgcaatgtgccgtct
tgccgtaagtggttttgtaattcaagggggaatacttcgggctcacatattgttaatcac
ctggtgcgagcaaaacacaaggaggtgtgccttcataaagatagtccacttggagaaacg
attctagagtgctacaattgtggatgccgaaatgtctttcttcttggtttcatttctgct
aaggcagagagtgttgttgttctcctctgtagggaaccttgtcttagtgttaatgcattg
aaggatatgaactgggacctaagccagtggtgcccgctcattgatgacaggtgctttttg
cagtggcttgttaaggtcccctctgagcaagaacagttgagggcgcgccagatcagcgct
caacaaatcaacaaagtagaagaattgtggaagactaatccagatgctaccctggaagat
cttgagaagcctggtgtagatgatgagcctcagcccgttgccttgaagtatgaagatgcc
tatcagtatcaaaacatatttgcaccattgatcaagctcgaagctgactacgataagatg
atgaaagagtctcagagtaaagacaatcttactattcgatgggatattggtctcaacaag
aaacgcgttgcgtactttgtcttccctaaggaagataatgagttgcgtcttgtacctggt
gatgagctaaggctgcgatattcaggggatgcagcacatccagcttggcaatccgtgggg
cacgtggtaaaattaactgctcaagaggaggttgcgcttgaacttcgtgtcagccagggg
gttcctgtcgatgtgacccatgggcttagtgttgactttgtttggaaaagtacgagcttt
gatcggatgcagagtgcgatgaaaacctttgcagtggatgagactagtgtcagtggatat
atttaccatcacctgttaggtcatgaagttgagatgcagatggtccgcaatgcacttcct
cgccgttttggtgcccctggtcttccagagcttaatgcatctcaggtttttgctgtaaaa
agtgttcttcaaaagcccatcagtttaattcaaggtccacctggaacgggaaaaactgtc
acctctgccgccattgtgtatcatatggccaaacaaggccaaggacaggttttggtctgt
gcccccagtaatgttgctgtggatcaattagcagagaagataagtgctactggtctgaag
gtggtcaggctctgtgccaagtcaagggaagctgtcagttctcctgtcgagcatttaacc
cttcatatacaggttcgccatcttgacacgtctgagaagagtgaactgtacaagttacag
caactgaaggatgaacaaggagaactctccagcagtgatgagaagaagtataaagctttg
aagcgggcaacagagagggaaatagctcagagtgctgatgtaatttgttgcacatgcgtt
ggtgctggagaccctagattggctaacttcagattccgccaggtgcttattgatgaatcc
actcaggctactgagcctgaatgtcttattcctttggttcttggcgcaaagcaggctgtt
cttgtcggagatcattgccagcttggaccagtcattatgtgcaagaaagcggcccgtgct
ggacttgctcaatctctatttgagcgccttgtgtttctaggagtgaagccaattaggtta
caggtacaataccgtatgcatcctgcattatctgagtttccatcaaatagcttttatgaa
ggtacactccaaaatggtgtaaccatcaatgaaaggcaatcaacaggcattgatttccct
tggcctgtgcccaaccgtcccatgttcttctatgttcagatgggacaagaggagatcagt
gctagtggaacttcctatctgaatagaactgaagctgcaaatgtggagaagattgtgact
acatttctaaagagtggtgtagtccctagtcagattggggtcataacaccatatgagggt
caacgagcttacattgtaaattacatggcaagaaatggttccttgagacaacaactttac
aaggaaattgaggttgcaagtgttgattcatttcaagggagggaaaaggattatattatt
ttgtcttgtgtcaggagtaatgagcatcagggcattggattccttaatgatccacggagg
cttaatgttgcccttacacgtgctcgttatggtattgttatacttggaaatcctaaagtt
cttagcaaacagcctctgtggaatggcttgttgacacactacaaggagcatgagtgcttg
gtagaaggtcctctgaataacttaaagcagagcatggttcaatttcagaagcccaaaaag
atctacaatgagcgcagacttttctttggtggtggaccaggaattccaggtgacagtttt
ggatctgcttcaggccccaatgctgacaggagaaatagtcgttctaggggttcttatatg
gcacctggtgtacccaacggtactcagaaacctggtgttcatcctgctggttatccaatg
cctcgggttccctttccaccttaccatggaggccctccacaaccgtatgcaattcctact
cgtggtgctgtccatgggcctgttggagctgttcctcatgttccacagccaggtagccgg
ggttttggggctggacgtggcaatgccaatgcaccaattggtagtcatctccctcaccat
caaggcgcccagcaacaggctggaagtcttggatctaacttcaactttcctgcattggag
aatccaaacagtcagccttctgttggaggacctttatctcagcctggatatgcttctaat
atgggtatccagggaccaggccagacatttcgggatggatattctatgggtagcatgtca
caggatttcgtgggagatgatttcaagagccaggggtctcatgttccatataacgttgct
gacttctctacacaggcttctcaaagtggatatgctgttgattatgtaactcaaggagca
caggctggttttccagggaacttcttaaaccagagttcgcaatctggatactcccgtttt
ggttcaggaaatgaattcatgtcacaggactacatggctcatggatcccaaggtctcttt
actcaagctggatacaataatccatcacaagatgatggtccacagaatcattttggcatg
tccaatgcatctcttcagtctcagagttcgcttaatccactttactcccaaccatttgct
cactacaacacgcaaccatttaacatgcaaagccaacctcagcagcaagccccacaaggc
cagggcttccaaaatcagaaacttcactacaatagttga

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (21)   
   Pfam (21)   
All databases (28)   

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