KEGG   Nicotiana tabacum (common tobacco): 107796155
Entry
107796155         CDS       T04643                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
nta  Nicotiana tabacum (common tobacco)
Pathway
nta03018  RNA degradation
nta03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nta00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107796155
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107796155
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nta03019]
    107796155
   03041 Spliceosome [BR:nta03041]
    107796155
Messenger RNA biogenesis [BR:nta03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107796155
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     107796155
Spliceosome [BR:nta03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    107796155
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 107796155
NCBI-ProteinID: XP_016474384
UniProt: A0A1S3YBJ9
Position
Un
AA seq 98 aa
MASGPGLESLVDQTISVITNDGRNIVGVLRGFDQATNLILDESHERVYSTKEGVQQLVLG
LYIIRGDNISVVGELDEELDANLDMSKLRAHPLKPVVH
NT seq 297 nt   +upstreamnt  +downstreamnt
atggctagtggacctgggcttgagtctcttgtcgatcaaaccatctcagttattacaaac
gatgggcgaaatatagtgggagttttgagaggatttgaccaggctacaaatttgattctc
gatgaatctcatgagagggtgtattcaacaaaggaaggtgtacagcagctcgtcttaggt
ctttatatcataagaggggacaacataagtgttgttggggaattggatgaagagttagac
gcaaacttggatatgtcgaaacttagagcacatccattaaagccagttgttcattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (16)   

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