KEGG   Nicotiana tabacum (common tobacco): 107815219
Entry
107815219         CDS       T04643                                 
Name
(RefSeq) probable CCR4-associated factor 1 homolog 9
  KO
K12581  CCR4-NOT transcription complex subunit 7/8
Organism
nta  Nicotiana tabacum (common tobacco)
Pathway
nta03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nta00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107815219
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nta03019]
    107815219
Messenger RNA biogenesis [BR:nta03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107815219
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     107815219
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 107815219
NCBI-ProteinID: XP_016496243
UniProt: A0A1S4C577
Position
Un
AA seq 269 aa
MTIKIREVWADNLESEFELISTVIDQYPFISMDTEFPGVVFKPAEVYRRRQNLPSDQYKL
LKSNVDVLNLIQLGLTLSDAEGNLPDLGSGEGYRYIWQFNFSDFDVTCDLYAPDSIEVLR
RQGIDFEMNRECGIDSARFAEFMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTRRELPGG
LEDFLEILRAFFGNKVYDVKHMMRFCNSLYGGLDRVASTLAVDRVVGKCHQAGSDSLLTW
HAFQKMRDIYFVKDGPEKHAGVLYGLEAY
NT seq 810 nt   +upstreamnt  +downstreamnt
atgactataaaaattcgggaagtatgggctgataatcttgaatcagaatttgaactcatt
tctacggtgattgatcagtacccttttatatccatggatacggagtttcccggtgttgtt
ttcaagcctgctgaagtttaccgtcgccggcaaaatttgccgtccgatcagtataagtta
ttgaagtcaaacgttgacgtattgaatcttattcagctcggtcttaccttatctgacgct
gagggaaacttacctgatttgggctccggcgaaggttaccggtacatctggcagttcaac
ttctctgattttgatgtgacctgtgatttatacgcgccggactctatcgaggttctccgg
cgacaggggattgatttcgagatgaaccgagaatgtgggattgactcggcccggtttgca
gagtttatgatgtcgtccggtctggtatgtaatgattcagtaagttgggtcacgtttcac
agcgcgtacgattttgggtatcttgtgaagattctcacgcgcagggaattgcctggtggt
ttagaggactttttggagattcttagggcgttttttggaaacaaagtttatgatgtgaag
catatgatgaggttctgtaatagcctctatggtgggttagaccgggttgcgagtacattg
gctgtggaccgggtggtcggcaaatgccaccaggccggttcagatagcttgttgacgtgg
catgcatttcagaaaatgagggatatttatttcgtaaaagacgggccagaaaaacacgct
ggagtcttgtatggattagaagcttattag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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