KEGG   Nicotiana tomentosiformis: 104085479
Entry
104085479         CDS       T05025                                 
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
  KO
K12581  CCR4-NOT transcription complex subunit 7/8
Organism
nto  Nicotiana tomentosiformis
Pathway
nto03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nto00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104085479
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nto03019]
    104085479
Messenger RNA biogenesis [BR:nto03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     104085479
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     104085479
SSDB
Motif
Pfam: CAF1 RNase_H_2
Other DBs
NCBI-GeneID: 104085479
NCBI-ProteinID: XP_009587812
Position
Unknown
AA seq 275 aa
MAVDEADPDPNMIKIREVWANNLKSEFALISTVIDQYPFVSMDTEFPGVIYKHSPRKHAP
LSTADKYTLLKWNVDALNIIQLGITLSDSVGNLPDLGSSDHRYIWQFNFSDFDVARDNHA
PNSIELLRLQGINFEMNRVLGIDSAVFAELMMSSGLVCNDWVSWVTFHSAYDFGYLVKIL
TRQKLPCGLNDFLGILRVFFGNKFYDVKHLMSFCGHHGGLNRVAKDLDVNRAVGKSHQAG
SDCLLTWHVFHKIRDNYFLKGGLEKYAGVLYGFEV
NT seq 828 nt   +upstreamnt  +downstreamnt
atggctgttgatgaagcagatccggatccgaacatgataaagatccgagaagtatgggct
aataatcttaaatccgaattcgcactcatttcaactgtgattgatcagtacccttttgta
tctatggacacagaattccccggtgttatctacaagcacagtccccggaaacacgcgccg
ctgtcgacggcggacaaatatacgctgttgaaatggaacgtcgatgctttgaatattatt
caacttggtattacgctttctgattctgtcggaaacttgccagatttgggctccagcgac
caccggtacatatggcaattcaatttctccgactttgatgtagcgcgtgataaccacgcg
ccaaactcgatcgagctcctccgcctgcagggaataaattttgaaatgaaccgggttttg
gggattgactcagcggtttttgccgagttgatgatgtcctcaggcctggtttgcaatgac
tgggtgagttgggtgacttttcacagcgcgtacgatttcgggtacttggtaaaaatcctc
acgcgccagaaattgccctgtgggttaaatgactttttgggaattctcagggtgtttttt
ggaaataaattttatgatgtgaagcatttgatgagtttctgtggacatcacggtggttta
aaccgggtggcgaaggatttggacgtgaaccgggcggtcgggaagagtcaccaggccggt
tcagattgtttgctgacgtggcatgtttttcataaaataagggataattattttttaaaa
ggtggactggagaaatatgctggcgtcttgtatggattcgaagtgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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