KEGG   Nicotiana tomentosiformis: 104092586
Entry
104092586         CDS       T05025                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
nto  Nicotiana tomentosiformis
Pathway
nto03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nto00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104092586
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nto03019]
    104092586
Enzymes [BR:nto01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     104092586
Messenger RNA biogenesis [BR:nto03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     104092586
SSDB
Motif
Pfam: Helicase_C OB_NTP_bind R3H DEAD HA2_C HA2_N ATPase Ank_2 nSTAND3 AAA_19 AAA_22 Ank_5 ResIII AAA_7 Rad17 AAA_23 ABC_tran AAA_14 AAA_16 NACHT Sigma54_activat
Other DBs
NCBI-GeneID: 104092586
NCBI-ProteinID: XP_009596511
Position
Unknown
AA seq 1207 aa
MASTATGASPSSSGFGKKRQKKGQRLQEVTNVAESTRIRVAQVLEQFRASNDEVYTFESN
LSNRDRAAVHMLCRKMGMKSKSSGRGDQRRISIFKTKNTVETLEGKDALSFFKFSGEAKD
VLQDLFTKYPPDNGETSEQVVGKHSKKVDKYRGKKDDVFCKPAMNKSEIAKRAESLASRI
ENTPNLRQITVQRSKLPIASFKDVITSTVESNQVVLISGETGCGKTTQVPQFILDHMWGK
GETCKIVCTQPRRISATSVSERISAERGESVGDTVGYKIRLESRGGKHSSIVFCTNGVLL
RVLVTKGSASFNKKAPRKMGTDDISDITHIIVDEVHERDRYSDFMLAILRDLLPSYPNLR
LVLMSATLDAEHFSKYFGGCPIIRVPGFTYPVKTFYLEDVLSIVKSTENNHLDSTSTTVM
SEESTLTEEYKVALDEAINLAFSDDDLDPLLDLISSDGGPKVFNYQHSLSGVTPLMVFAG
KGCIGDICMLLSFGADCHLSANDGKNALDWAERENQTEAAELIKKHMEKSSSNCEEQQHL
LDKYLSTVDPELIDDVLIEQLVRKICIDSEDGAILVFLPGWEDINRTRERLRSSQYFKDT
SKFSVIALHSMVPSVEQKKVFRRPPPGCRKIVLSTNIAETAITIDDVVYVIDSGRMKEKS
YDPYNNVSTLQSSWVSKASAKQREGRAGRCQPGICYHLYSKLRAASLPDFQVPEIKRIPI
EELCLQVKLLNPDCKIEEFLKKTLDPPVYETIRNAIIVLQDIGALSVDEKLTELGERLGS
LPVHPLTSKMLLIAILLNCLDPALTLACASDYRDPFTLPMLPNEKKRASAARAELASWYG
GRSDQLAVVAAFEGWKSAKESGQESRFCSTYFVSSSTMNMLSGMRKQLQSELLRNGFIPG
DGSSCSLNAQDPGILHAVLVAGLYPMVGRLLPPLKGGKRAVIETAGGDKVRLHPHSTNFK
LSFKKFCDRPLIVYDEITRGDGGLHIRNCSVIGPLPVLLLATEIVVAPGIEEDDDDDDDN
DDDESDYEDADEDDGEEDNIKADQGQKVMSSPENTVKVIVDRWIPFESTALDVAQIYCLR
ERLAAAILFKVSHPGKVLPEILAASIYAMACILSYNGMTGISLLLEPVDSLTTMVSATEI
GHPDRGSYNGMDMNPINSLSSPMYHGQHQRYYTHHQRGGIHISKGSFMHGGGTMKRDHSK
RQRGNGS
NT seq 3624 nt   +upstreamnt  +downstreamnt
atggcgtcaacagctacaggagcttcaccatcatcttctgggtttgggaaaaagaggcaa
aagaaagggcaaagactacaagaagttacaaatgttgcagaatccactcggattcgggtc
gcccaagttcttgaacagttccgtgcttctaatgatgaagtgtatacatttgaatcaaac
ctttcaaatcgcgacagagctgcagttcatatgttatgccggaaaatgggtatgaaatcc
aaaagttctgggcgtggggatcaacgtcgtatatctattttcaagactaaaaatacagtg
gagacactggaaggaaaggatgcactaagtttttttaaattttcgggagaggcaaaagac
gttctacaggatttatttacaaaatatccacctgataatggggagacaagtgaacaagta
gttgggaaacacagtaagaaagttgataaatatcgaggaaagaaggatgatgtgttctgt
aaacctgcaatgaacaagtcagaaattgcaaaaagggcggagtcacttgcttcaagaata
gaaaataccccaaacctgagacagattacagtacagaggtctaagcttccaattgcttcc
ttcaaggatgtcattacatctacagttgaatctaatcaggtggtcttgatctctggtgaa
actggatgcgggaaaactacgcaggtcccccaatttattttggatcatatgtggggtaaa
ggtgagacatgtaaaattgtatgtactcagccccgacgaatttctgccacatcagtttct
gagagaatctctgctgaaagaggcgaaagtgttggcgacactgttggttacaagatacgg
ctggaaagcagaggtgggaaacactcatcaattgtgttttgtaccaatggggttctactg
agggtcctggttaccaaaggaagtgccagcttcaacaaaaaagctcccaggaaaatgggc
acggatgacatttctgatataacccacatcattgtggacgaagttcatgaaagggatcgc
tactccgatttcatgctcgcgattctcagggacttgcttccgtcatatccaaatttgcgt
ctggttctgatgagtgctacacttgatgctgaacacttttcaaaatactttggcggctgc
ccaattatccgagtccctggatttacttatcctgtaaaaactttttatcttgaggatgtt
ctttctattgtaaagtcaactgaaaataatcaccttgattccacctcaaccactgtcatg
tccgaggagtcaacattaactgaggagtacaaagtcgccttagatgaagcaattaatttg
gctttttcagatgatgatctcgatccccttttagatctaatatcttctgacgggggacca
aaagtgttcaattatcagcattctttgagtggagtgacaccattgatggtgtttgctgga
aaaggctgtattggtgacatttgcatgctcctctcttttggtgctgactgccatttaagt
gctaatgatggaaaaaatgctctagattgggctgaacgggagaatcagacagaagctgct
gaactaattaagaaacacatggagaaatcatcttccaattgcgaggagcagcagcattta
cttgacaaatacctatcaacagttgaccctgaactgattgatgatgtccttattgagcaa
ctagtaagaaaaatatgtatagactcagaggacggagcaatccttgttttcctccctggt
tgggaggatattaacagaacacgagagagattacgctcaagccagtacttcaaagatacg
tctaagttttcagtaatcgctctccattctatggttccatccgtggagcaaaagaaggtc
tttagacgccctccaccaggctgccgcaaaattgttctttcaactaatattgctgaaact
gccattaccattgatgatgttgtttatgtaatagacagtggacgaatgaaagaaaaaagt
tatgacccttataataatgtatcaacgcttcaatcttcatgggtctcaaaagctagtgca
aagcaaagagagggtcgtgctgggcgctgccagccaggaatttgttatcatctttattca
aaacttcgagcagcttcattgcccgatttccaggttcctgagattaagaggattcctata
gaggaactatgtcttcaggtcaagcttcttaaccctgattgcaagatagaagaattcctg
aagaagacacttgaccctccggtttatgagaccatacgtaatgcaatcattgttctgcaa
gatattggggcgttatcagttgatgagaaacttacagagcttggtgaaaggctaggatct
ttaccagttcatcctcttacaagcaagatgctcttaattgccatattattgaactgcctt
gacccagcattgacgttggcctgtgcttctgactatagagatccatttaccctacctatg
ttgccaaatgagaagaagagagcttcagctgcaagagccgagttagcctcatggtacggt
ggaagaagtgatcaattagcagttgtagctgcgtttgagggctggaaaagtgcgaaagaa
agtggtcaagagtcgaggttttgttctacgtactttgtatcctcaagcactatgaacatg
ttatcaggaatgcgtaaacaactgcaatctgaactcttgaggaatgggtttattccagga
gatggatcttcctgtagccttaacgcacaggatccaggcatattacatgctgttcttgtt
gctggtttgtaccctatggttgggagactgcttccgcctctgaaaggtggtaagagggct
gtcatagagactgcaggtggcgataaagttcgattgcaccctcattctactaactttaag
ctttcattcaaaaaattctgtgatcgaccattaattgtatatgatgagataacacgtggt
gatggaggtcttcatataaggaactgtagtgttattgggccactcccagttttgttgctg
gcaacagagattgttgtggctcctggaattgaagaagatgatgatgatgacgacgacaat
gatgatgatgaaagtgattacgaagatgctgatgaggacgatggtgaggaagataatatt
aaagcggatcaagggcagaaagttatgtcttctcctgaaaatacagttaaggtcattgtt
gataggtggattcctttcgagtcaacagctcttgatgttgctcaaatttactgcctgaga
gagcgattagctgcagcaattttattcaaggtctcacatcctggaaaagttcttcctgag
attcttgcagcctctatatatgcaatggcttgcatcctctcgtacaatgggatgacaggt
atctcattgctgctggagcctgtggactcgcttactacaatggtcagtgctactgagatt
ggtcatcctgatcgtgggagttataatggaatggatatgaatcccataaattctctcagt
tcacctatgtaccacggccagcatcagcgctactatacgcatcatcaaagaggcggcatt
catatatcaaagggatcgttcatgcatggaggaggaaccatgaaaagagatcattctaaa
cggcagcgtggaaatggatcttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (21)   
   Pfam (21)   
All databases (40)   

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