KEGG   Nicotiana tomentosiformis: 104106675
Entry
104106675         CDS       T05025                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
nto  Nicotiana tomentosiformis
Pathway
nto03018  RNA degradation
nto03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nto00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104106675
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104106675
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nto03019]
    104106675
   03041 Spliceosome [BR:nto03041]
    104106675
Messenger RNA biogenesis [BR:nto03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     104106675
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     104106675
Spliceosome [BR:nto03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    104106675
 Complex C
  U2 snRNP components
    104106675
SSDB
Motif
Pfam: LSM SM-ATX DUF150_C
Other DBs
NCBI-GeneID: 104106675
NCBI-ProteinID: XP_009613566
Position
Unknown
AA seq 93 aa
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTKVVDQDKFPHMLSVRNC
FIRGSVVRYVQLPPEGVDIELLHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgtttttttcatacttcaaggacctggtgggcagagaagtgacagtggaactgaag
aatgatttggctatccgaggcacgctccattcagttgatcagtatctcaacattaagctc
gaaaacacaaaggtcgttgatcaagacaagttccctcacatgctttcagtgaggaactgc
ttcatcagaggatcggttgtgagatacgtccagttacctcccgagggagttgacattgag
ctgcttcatgatgctacgaggagagaagctcggggtggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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