KEGG   Nicotiana tomentosiformis: 104116359
Entry
104116359         CDS       T05025                                 
Name
(RefSeq) cell division cycle protein 48 homolog
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
nto  Nicotiana tomentosiformis
Pathway
nto04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:nto00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    104116359
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nto03019]
    104116359
   03009 Ribosome biogenesis [BR:nto03009]
    104116359
   04131 Membrane trafficking [BR:nto04131]
    104116359
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:nto04147]
    104116359
Messenger RNA biogenesis [BR:nto03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     104116359
Ribosome biogenesis [BR:nto03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    104116359
Membrane trafficking [BR:nto04131]
 SNARE
  SNARE associated proteins
   Others
    104116359
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    104116359
Exosome [BR:nto04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   104116359
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N CDC48_2 AAA_16 AAA_2 AAA_5 AAA_33 AAA_22 AAA_14 TIP49 AAA_18 RNA_helicase AAA_28 AAA_17 ATPase_2 Mg_chelatase nSTAND3 IstB_IS21 Viral_helicase1 Parvo_NS1 AAA_7 ABC_tran Zeta_toxin Vps4_C DUF815 TsaE SLFN-g3_helicase NB-ARC NACHT UFD1 Molydop_binding ATP-synt_ab
Other DBs
NCBI-GeneID: 104116359
NCBI-ProteinID: XP_009625492
Position
Unknown
AA seq 810 aa
MADPTSSTSDPTSSKNDFSTAILERKKSPNRLIVDEALNDDNSVVSMHPAKMEELQLFRG
DTVLLKGKKRKDTVCVVLVDDQCEEPKIRMNKVVRANLKIRLGDVVSVYQCPDVKYAKRV
HILPIDDTIEGMTGNLFDAYLKPYFLESYRPVRKGDLFVVRGGMRSVEFKVVETEPGEYC
VVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGV
KPPKGILLYGPPGSGKTLIGRAVANETGAFFFLINGPEIMSKLAGESEGNLRKAFEEAER
NAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRYHVIVMGATNRPNSIDP
ALRRFGRFDREIDIGVPDEVGRLEILRIHSKNMKLADNVDLERVARDTHGYVGADLAALC
TEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGASNPSALRETVVEVPNIS
WEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC
QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAMQRGHSVGDGGG
AADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRLQ
IFKACLRKSPVSKDVDLAALSRYTHGFSGADITEICQRACKYAIRENIEKDIEREKKRRE
NPEAMDEDDSDEVAEIKPAHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGTEFKFA
EHAANTTATGATTDPFASANAAGDDDDLYS
NT seq 2433 nt   +upstreamnt  +downstreamnt
atggcggatccaacttcttccacttccgacccgacaagtagtaaaaatgatttttcaact
gcaattttggagaggaagaaatcccctaaccgacttattgttgatgaggccttaaatgat
gacaattcagtggtatctatgcaccctgctaaaatggaagagctgcaactatttcgagga
gatactgtcttgctaaagggtaaaaaacggaaggacactgtttgcgttgtccttgtggat
gaccaatgtgaagaacctaagatcagaatgaacaaagtagttcgagctaatctcaagatt
cgtcttggggatgttgtatctgtatatcagtgtcctgatgttaagtatgcgaagcgtgtt
cacattcttcctattgatgacactattgagggtatgactggcaacctgtttgatgcgtac
ttgaagccatacttcttggagtcttaccgtcctgtcaggaagggcgatctcttcgtagtc
agaggtggtatgcgcagtgttgaatttaaagtggttgagacggagcctggagaatattgt
gttgttgcacctgatacagagatcttttgtgagggagaacccatcaagcgtgaggatgag
gagagactaaatgaagttggatatgatgatgttgggggtgtgaggaagcagatggctcag
attcgtgagctcgttgaactccctctgaggcatcctcagctattcaagtcaattggtgtg
aaaccaccaaaaggtattctcctgtatggtcctccgggatcggggaagaccctgattgga
agagctgtggccaatgagactggtgcatttttctttctgattaatgggcctgaaataatg
tctaaattggctggtgagagtgagggtaacttgaggaaagcattcgaggaagccgaaagg
aatgcaccatctatcatatttattgatgagctagattcaattgctccaaagcgagaaaag
acacatggtgaagttgagcggcgtattgtttcccaacttctgacattaatggatgggctc
aagtctcgatatcatgtgattgtcatgggggccaccaacagaccaaacagcattgatcct
gctctcaggagatttgggagatttgaccgagagattgacattggcgtaccagatgaagta
gggcggttggagatcctacgtattcatagtaaaaatatgaagctcgctgataatgttgat
ctagaaagagttgcaagagacacgcatggttatgttggagctgatcttgctgccttgtgc
actgaggctgcactgcaatgtatcagagagaaaatggatgttattgacttggaggatgag
accatcgatgccgaagttttgaattcaatggctgtcactaatgagcattttcaaactgct
ctgggtgcttcaaatccatcagctttacgtgaaacagttgtggaggttcccaacatctct
tgggaggatattgggggtctggacaatgtcaagcgggaacttcaagagactgttcagtac
ccagttgagcatcctgagaaatttgagaagtttggcatgtctccttctaaaggggttctt
ttctatggacctcctggttgtggcaaaactctgcttgccaaagctattgcaaacgagtgt
caggctaactttataagtgtgaaaggacccgagttgcttacaatgtggtttggagaaagt
gaagcaaatgttcgggaaatatttgacaaggcacgacagtctgctccatgtgtactgttc
tttgatgaacttgattccattgctatgcagagggggcattctgtgggagatggtggtggt
gctgctgatagagtactcaatcaattgttgacggaaatggatggaatgacagcaaagaaa
acagtattcatcattggggcaactaataggccagacattattgaccctgcattgctcaga
ccaggtcgtctagaccaattaatttacatccccctccctgatgaagcttcccgtcttcaa
atcttcaaagcatgtttgcggaagtcccccgtctctaaggacgtggatctggcagctctc
tcacggtatacacatggttttagtggtgcagacataactgagatttgtcagcgagcatgc
aaatacgccattagagaaaacattgaaaaggatattgagagagagaagaagaggagagag
aaccctgaagccatggatgaagatgacagtgatgaagtggctgagataaagcctgcacac
tttgaggagtccatgaaatatgctcgaagaagtgtgagtgatgctgacattaggaagtac
cagctttttgctcaaacattacagcaatcacgcggatttggaaccgagttcaaatttgca
gagcacgcagctaatactacagcaactggggcaacaaccgacccgttcgcttctgctaat
gctgctggagacgacgacgacttgtatagttaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (34)   
   Pfam (34)   
All databases (47)   

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