KEGG   Nematostella vectensis (starlet sea anemone): 5518880
Entry
5518880           CDS       T01037                                 
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD isoform X1
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
nve  Nematostella vectensis (starlet sea anemone)
Pathway
nve03022  Basal transcription factors
nve03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:nve00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    5518880
  09124 Replication and repair
   03420 Nucleotide excision repair
    5518880
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nve03021]
    5518880
   03400 DNA repair and recombination proteins [BR:nve03400]
    5518880
Enzymes [BR:nve01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     5518880
Transcription machinery [BR:nve03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     5518880
DNA repair and recombination proteins [BR:nve03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     5518880
SSDB
Motif
Pfam: HBB DEAD_2 Helicase_C_2 DEAD ResIII nSTAND3 AAA_11 Exog_C
Other DBs
NCBI-GeneID: 5518880
NCBI-ProteinID: XP_001638817
UniProt: A7RNX6
Position
Unknown
AA seq 759 aa
MKLNIDGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHCLLEMPSGTGKTVSLLSLIVAYL
KNKPLELTKLIYCSRTVPEIEKVMEELKKLTEYYESETGEKPNILALALSSRKNLCIHPE
VAGEREGKKVDGKCLSMTASFVRLKHKEDSSVPVCNFYEDFDSLGRDEKMPPGSYNLDDL
RQFGRKKGWCPYFLARRAIYHANVIVYSYHYMLDPKIADLVSKELDKKAVVVFDEAHNID
NVCIDSMSVTISRRTLDRSHANVESLASVIDRIKATDAQKLREEYNRLVEGLRQASEARD
TDIVLSNPVLPDEVLQESVPGNIRKAEHFVGFMRRFIEYLKTRLRIQHVVQESPMSFLQH
IYQQVCIERKPLRFCAERLSSLLRTLEIPEMQDYGPLVLIANFATLVSTYNKGFNIIIEP
FDDRTPTIPNPILHFSCMDASIAVKPVFDRFQSVVITSGTLSPIDMYPKILDFRPVTMAT
FTMTLARTCLCPMIVSRGSDQVAMTTKFEMREDLAVIRNYGNLLTEMSAVVPDGIVCFFT
SYLYMESVVSLWHDQGIISNIQKNKLLFIETTDAAETSLALHNYQKACENGRGAILLSVA
RGKVSEGIDFDHHYGRAVIMFGIPYVYTQSRILKARLEYLREQFNIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGIMVFADKRFSKVDKRGKLPKWIQEYLKESLCNLSTDESVQIAKRF
LRQMAQPFEREDQLGLSLLTFEQVQSEEFQKRIIQSAMA
NT seq 2280 nt   +upstreamnt  +downstreamnt
atgaagcttaacatagatggcttgcttgtgtacttcccgtatgactacatctacccagag
cagtactcctacatgctggagctcaaacgcaccctggatgccaagggacattgtcttctt
gagatgccgtctggaactggaaaaactgtctctctcctctcacttattgtggcctacctc
aaaaacaaacctttagaattgacaaagttgatctactgctctagaacagttccagagata
gaaaaggttatggaagagctgaagaaattaacagaatactacgaaagtgagactggagag
aaacccaacatccttgcgttagccctcagttccaggaagaacctgtgcatacatccagag
gttgctggagagagagaagggaaaaaggttgatgggaaatgtctttccatgacagcgtca
tttgtccgactcaaacacaaggaagactccagtgtccctgtgtgcaacttttatgaggat
tttgactctctgggtagagatgaaaagatgccgccaggaagctacaacttggatgacctg
agacagtttggccggaagaaaggatggtgtccatactttctggcaagaagagctatttat
catgctaacgtaatagtgtacagctaccactacatgttagaccctaagatagcagatctg
gtctccaaggaactggacaaaaaagcagtggtggtatttgatgaggcccacaacatagat
aatgtttgtattgactccatgagcgtgaccatctctagacgtaccctggataggagtcat
gctaatgttgagtccctcgcatcagtcattgacagaatcaaggcgacagatgctcagaaa
ttgagagaagaatataacagacttgtagaaggtttacgtcaggcaagcgaagcaagagac
acagatatcgtcctatcaaatccagtcctcccagatgaagtgctacaagagtctgtccca
ggaaatattcggaaagctgagcattttgttggtttcatgagaaggtttatagagtattta
aagacgcgtttgcggattcaacacgtggttcaggaaagcccaatgtcattcttgcaacac
atctatcagcaagtctgcattgagcgcaagcctcttaggttctgtgctgagcgcctcagc
tcgctgctccgcactctagagatccctgaaatgcaggactacggtcctttggtgctgatc
gcgaactttgccacgctagtcagcacctataataaagggttcaatatcataattgagcca
tttgatgacaggacgcccactattcctaaccccatcctgcacttcagttgtatggatgcg
tctatcgcggtgaaacctgttttcgacagattccagtctgtcgtaatcacttcagggaca
ctttctccaattgacatgtatccaaagattctagacttccgtcctgtcactatggcaacc
tttactatgacactggcccggacgtgcctttgtccgatgattgtaagccgaggaagtgac
caggttgcaatgacgacgaagtttgagatgagggaggatttggccgtcatacgtaactat
ggcaacctattgacggagatgtcggccgtggtgcctgatgggattgtttgttttttcacg
agttatttgtacatggaatccgtggtctctctctggcatgaccagggtatcatcagtaac
atccaaaagaataagcttctctttatcgagacaacagacgccgctgagacgagcctcgcc
ctccataactaccaaaaggcttgtgagaacggtcgcggtgcgatccttttatctgtcgcc
aggggcaaagtctccgagggaatcgacttcgatcaccattacggaagggctgtgatcatg
tttggaatcccttatgtgtacacacaaagcagaatacttaaggcccgactggagtacctt
agagagcagttcaacatccgcgaaaacgacttcctgacgtttgatgccatgaggcatgca
gcacagtgtgttggacgggctatccggggcaagacagactatggtatcatggtattcgct
gacaagcgcttctccaaggtcgacaaacgagggaagttacccaagtggatacaggaatac
cttaaggagtctctgtgtaatctgtctaccgatgaaagtgtacagatagccaagagattt
ctgagacagatggcgcaaccatttgaacgggaggatcaacttggcctgtcgcttttgaca
ttcgagcaagtgcagtcggaagagtttcagaagaggatcattcaatccgccatggcctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (8)   
   Pfam (8)   
All databases (26)   

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