KEGG   Octopus bimaculoides (California two-spot octopus): 106878851
Entry
106878851         CDS       T04127                                 
Name
(RefSeq) THO complex subunit 2
  KO
K12879  THO complex subunit 2
Organism
obi  Octopus bimaculoides (California two-spot octopus)
Pathway
obi03013  Nucleocytoplasmic transport
obi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:obi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106878851
  09122 Translation
   03013 Nucleocytoplasmic transport
    106878851
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:obi03019]
    106878851
   03041 Spliceosome [BR:obi03041]
    106878851
Messenger RNA biogenesis [BR:obi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     106878851
Spliceosome [BR:obi03041]
 Complex C
  Other components
   EJC/TREX
    106878851
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    106878851
SSDB
Motif
Pfam: Tho2 THOC2_N Thoc2
Other DBs
NCBI-GeneID: 106878851
NCBI-ProteinID: XP_052828390
EnsemblRapid: LOC106878851
Position
13:complement(36693225..36892129)
AA seq 1522 aa
MAAIRVTVEACKNWEKNGKIEFIKFCKGISNVSSLETSDLPFHKALYDLFISVVRGHMKP
DHAVSTITEIVDFHKELPSLLASILSIIDVESSCSDDKQQRDRFLLLVSGMVGIVPDCVL
KERLDQETLECVGLIQSKQLFQQKYVKTKTKLYYKQQKFNLLREESEGYAKLMSELNQDL
SDGIGYLQVLETIKSLIGCFDLDPNRVLDILLESFECRPENEQFFIALFKLYMSEQRTLC
HVLGFKFHFYQSAAEDSPDSLYKVAALLLKHNLIELDDLYPHLCPADTSIVEYHQRILLE
AKQLARKLSIVCVSDKANEKDKENDNDAKINLQDSNQKLGLCKALLSVGDWPHAKAIMDR
IPDYFVTSHKPTAQALCTLIHSLIEPIYRENTGFPAAVLKRKSKDKIQNLERAGSFLKLY
EDVFPMLTYLGPHASYDVILLVKFIRIGKSFMIKRQERKIKPEDDITFYGFLTILDEVLL
PSLTLLPCNCCLSEELWSFLKLFPYELRYRLYGHWKNETYTLHAKMIHAKVNCLERAKYI
MKRLSKENVKPSGRQLGKLSHSNPGVLFEYVLSQIQKYDNFIVPVVDSLKYLTSLSYDVL
AYSVVEAVANPDRERLKHDDTNISLWLQSLASFAGSVCRKYPVELAGLMQYVANQLKAGK
SFDLLLLREIVQKMAGIEISEEITDDQLEAMSGGELLRQEGGYFAQVRNTKKSSTRLKDA
LLEHDLALSLCLLMAQQRDGVIYKEGNERHLKLTGKLYDQCQDTLVQFGSFLSMQLSTEE
FIKRLPPINELIGVYHVPQDAAFFLCRPLYSYRVNTKFEELKKAEKSSKQFSSQQKTQKY
VEASSLVMEPVIELIRPLYPAKVWDDLSTPFYFTFWALCMYDLHVPCTAYEKQIQQLRAQ
IVAIDENDLPQSKKKKDKERCTSLIEKLMDEEKKQSDHVQRVMARLKHDKDSWFLCRSTK
NEMITQFLQLCIFPRCCLTASDALYCAKFIYILHEQKTPNFSTLICCDRIFCDITYTVTS
CTENEAHRYGRFLCAALETIMKWHSDKVTYEKECANYPGFVSVIRKGSDNINKADQLDYE
NYRHVCHKWHFRITKAMVACLESRNYIQIRNSLIILTKILPYYPRVMQFGQALERRVNRI
RQEEKEKRPDIYALAMGYSGQLKNKKSMWVPEHEFHIKNKEAPKNQTKSTSHSSKHDISR
KSMENKTRDGKEIKEIKKEKNDKKVDKIEPAVEGRSKPNLAADLKKNDFDKKPSVSALKE
ERNPLKERGTSKERSPEKNSDKENRHKEEKRHSKSHEEKIVTKERLSGSKEKTTSKEKSE
EKKLRKQEKDDEKYEEKKIKDSYYKEKDIGSSSSSSSSRYNEKPSTMVASGGGSCNQHRR
SVETSPKHPDDREAKRRKLESASSTSTKSPSSEKEREYYEEKKKEKKRDISSDRSSVEVK
KRKGNSKLNGESVELQLSSSMSKEEHRRQEKQFSKHDSSEKERSKRESRSGEDEYREKVK
DKEKERMKRADKEKVSSKKLKK
NT seq 4569 nt   +upstreamnt  +downstreamnt
atggctgccatccgagttaccgtggaggcctgcaaaaattgggaaaaaaatgggaaaata
gaattcatcaaattctgcaaagggattagcaatgtttcaagtttggaaacttcagatttg
ccattccacaaagctttgtacgacttgtttatcagtgttgtgcgaggtcatatgaaacct
gatcatgctgtttcaacaattactgaaatagtggatttccacaaagagctaccttcatta
cttgctagtattctcagcataatagatgttgaatcaagttgcagtgatgataaacaacag
cgagatcggtttcttctattggtttctggcatggtgggtattgtccctgattgtgttttg
aaagagagattggaccaagagactttagaatgtgtgggtttaatacaatctaaacagctc
ttccaacaaaaatatgttaaaaccaagacaaaactctactacaaacaacagaaattcaac
ttacttcgtgaagaaagtgaaggttatgcaaaacttatgagtgaactaaatcaagacctg
tcagatggtattgggtatttgcaagtactggaaactatcaagtcattgataggttgcttt
gatcttgaccccaatagagtgctcgatatactgctggaatcgtttgagtgccgtcctgag
aatgaacaatttttcattgctttgtttaaactgtacatgagtgaacagaggactttgtgt
catgtacttgggttcaaatttcatttttatcagtctgctgctgaagatagtccagattct
ttgtataaagttgcagcacttttattaaaacataacctcatagaactggatgacttatat
ccacatttatgtcctgctgatacgagcatcgttgagtatcaccaacgtattttactggag
gctaagcaactagctcgcaagcttagtatagtttgtgtgtcagacaaggccaatgagaag
gacaaagaaaatgataacgatgctaaaatcaatctacaagacagcaatcagaaacttggc
ttgtgcaaagccttgttaagtgttggagattggccacatgctaaagctattatggataga
atccctgattactttgtcacatctcataaaccaacagctcaagccttgtgtactttaatc
cattcactaattgaacctatatacagggaaaacactggttttcctgctgcagttttgaaa
aggaaatcgaaagacaaaatccaaaatttggaaagagctggttctttcctaaaactatac
gaagatgtttttccaatgttgacttatcttggtccacatgcttcatatgatgtcattctt
ttggtgaaatttattcgaattgggaaaagttttatgattaaacgtcaagaaaggaaaatt
aagccagaagatgatatcacattttatgggtttctaaccatattggatgaagtgctgcta
cctagtttgacattgcttccttgtaactgttgcctctcagaagagctgtggagttttctt
aagctattcccctatgaactcagataccgtctgtatggacactggaaaaatgaaacatat
actctacatgcaaaaatgatacatgccaaagttaactgtttagaaagagccaagtatatt
atgaagcgactttcaaaagaaaatgtaaaaccttctggaagacaattgggtaaactcagc
cacagtaaccctggtgttctttttgaatatgtactttcacaaattcagaaatatgacaac
tttattgtgccagttgtggattcattgaaatacttaacatcattgtcttatgatgtccta
gcttattctgttgttgaagctgttgccaatccagaccgtgaaagactcaagcatgatgat
acaaatatttctctttggttacaaagtttggctagctttgctggctccgtttgtaggaaa
tatcctgtagaattggcaggtctcatgcaatatgtggccaatcagctcaaagctggcaaa
agttttgatctcttgttgttgcgagaaattgttcagaaaatggctggcattgaaatatct
gaagaaatcactgatgaccaacttgaagctatgtccggaggagagctacttcgtcaagag
ggtggctattttgctcaagttcggaatactaagaaatcttcaacccgattaaaagatgcc
ctgctagaacacgaccttgcattatccctttgcttacttatggcccaacaaagagatggt
gtaatatataaagaaggcaacgaacgtcatttaaaattgactgggaaattatatgatcag
tgccaagatactttggtccagtttggaagctttttatcaatgcaactaagtacagaagaa
tttatcaagcgtctaccaccaatcaatgaattaattggtgtttatcacgtccctcaagat
gctgcattctttttatgtcgaccattatattcatatagagtcaatactaaatttgaagag
ttgaagaaagcagaaaagtctagtaaacagttctccagtcaacaaaaaactcagaaatat
gttgaagcaagttcccttgttatggaacctgtgatagagttgattcgtccattgtatccg
gctaaggtttgggatgatctgagtacaccattctattttactttctgggccctttgtatg
tatgatctccatgttccatgtacagcttatgagaaacagatccagcaattaagagcacaa
attgtggccattgatgaaaatgacttgccacaaagtaaaaagaaaaaagataaagaaagg
tgtacttcattgattgaaaaactcatggatgaagaaaagaagcaatcagatcatgtgcag
agagttatggctcggttgaaacatgataaggactcttggttcttgtgtagatctaccaag
aatgagatgattacccaattccttcaactttgtatattccctcgttgctgccttacagcc
agtgatgctctttactgtgccaaatttatctatattctacacgaacaaaagactccaaat
ttctcaactttgatatgctgtgacagaattttctgtgacatcacatacactgtaactagc
tgcacagaaaatgaagcacaccgctatggacgatttctatgtgccgcattggaaactatt
atgaaatggcacagcgacaaagtcacatatgaaaaagaatgtgctaactatcctggcttt
gtcagtgtaatccgtaaaggatcagataacataaacaaagctgatcagctggattacgaa
aactacagacatgtatgtcacaaatggcatttccgaataacaaaagctatggtggcttgc
ttagaatcaagaaactacattcaaatcaggaattctcttataattctcacaaagattctt
ccatattatccaagagtaatgcagtttggtcaagcactagagcgaagagtgaacagaatt
cgacaagaagaaaaagagaagcgtccggacatttatgcacttgctatgggttattctggt
caactgaaaaataaaaaatctatgtgggttcctgaacatgaatttcatatcaaaaacaaa
gaagctccaaagaatcaaacaaaaagtacttcacattcatccaaacatgacatttccaga
aaatcaatggaaaataagacccgtgatggaaaagaaatcaaagagattaagaaggagaaa
aacgacaagaaagttgataagattgaacctgctgtggaaggaagatctaaaccaaatctc
gctgctgacctcaagaaaaatgattttgataaaaaacctagtgtcagtgccttgaaagaa
gagagaaatcctttaaaagagagagggactagcaaagaaaggtcacccgagaaaaatagt
gacaaagagaaccggcataaagaggagaagagacacagcaaaagtcatgaagaaaagatt
gtcacgaaagaaaggttgagcggatcaaaggagaagacgaccagcaaagagaagtctgaa
gagaaaaaactgcgtaaacaggagaaggatgacgagaaatacgaagagaaaaagattaaa
gacagttactacaaggagaaggacattggaagtagtagcagcagtagcagtagcagatac
aatgagaaaccttcaactatggtagcgtctggaggaggaagttgtaaccagcatcgacga
agtgtagaaacttctccgaaacatcctgatgaccgggaagcgaaacgaagaaagctggag
tcagcctcatccacttcaacaaagagtccttccagtgaaaaagaacgtgaatattatgaa
gaaaagaagaaagagaaaaaacgggatatttcttcagaccgctcaagtgtggaagtaaaa
aaaagaaaaggtaacagtaaactgaatggagaatcggtagagcttcagttatcgagttct
atgagtaaagaggaacacaggagacaagagaagcagttcagtaagcacgacagcagtgag
aaggaaagaagcaaaagagaaagtcgtagtggagaggatgagtaccgagaaaaggtaaaa
gataaagagaaagaacgcatgaaacgagcagacaaagagaaagtatctagcaagaagcta
aagaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (99)   
   KEGG ORTHOLOGY (1)   
   RefGene (94)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   ENSEMBLRAPID (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (110)   

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