KEGG   Oryza brachyantha (malo sina): 102704364
Entry
102704364         CDS       T02995                                 
Name
(RefSeq) transcription initiation factor IIF subunit alpha isoform X1
  KO
K03138  transcription initiation factor TFIIF subunit alpha
Organism
obr  Oryza brachyantha (malo sina)
Pathway
obr03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:obr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    102704364
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:obr03021]
    102704364
Transcription machinery [BR:obr03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIF
     102704364
SSDB
Motif
Pfam: TFIIF_alpha zf-C3HC4_3 DZR_2 ELL zf-RING_5
Other DBs
NCBI-GeneID: 102704364
NCBI-ProteinID: XP_015697454
Position
10:complement(3364785..3373285)
AA seq 531 aa
MGSTDLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSRARCLVCAAPITNLIREY
NVRANATTDKSFSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQLTENMREKYNRKPWI
LEDETGQYQYQGQMEGSQSSTATYYLLMMHGKEFHAYPAGSWFNFSKIAQYKQLTLEEAE
EKMNKRKTSATGYERWMMKAATNGPAAFGSDMKKLEPTNGTEKENARPKKGKNNEEGNNS
DKGEEDEEDEAARKNRLGLNKKSMDDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEA
VDIDPEERADLAPEIPAPPEIKQDDEENEEEGGLSKSGKELKKLLGKAAGLNESDAEEDD
EDDDQEDESSPVLAPKQKDQTKDEPVDNSPAKPTPSGHARGTPPASKSKQKRKSGGDDTK
ATGGAASKKAKVESDTKTSAAKDETPSSSKPASKATAASKTAANVSPVTEDEIRTVLLAV
APVTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVLRDDKK
NT seq 1596 nt   +upstreamnt  +downstreamnt
atggggagcacggacctggtgctcaaggcggcgtgcgagggctgcggctcgccgtcggac
ctctacggcacctcctgcaagcacaccacgctctgcagctcctgcggcaaatccatggcg
ctctcccgcgcccgctgcctcgtctgcgcggcccctatcaccaacctcatcagggaatat
aatgtacgggccaatgctaccactgataagagcttctctattggaagatttgtgacaggt
ttaccccctttctcaaagaagaagagtgctgaaaacaaatggtctcttcataaggagggc
ttgcaaggtcgccagcttactgagaatatgcgggagaagtacaatagaaagccatggatt
ttggaagatgaaactgggcaatatcagtatcaaggtcaaatggagggatcacagtcatca
acagctacatactatttgttgatgatgcatggcaaagaatttcatgcatatcctgctggt
tcttggtttaacttcagtaaaattgcacagtacaaacaacttacgctggaagaggctgaa
gagaagatgaacaagagaaaaaccagtgcaactggttatgagcgttggatgatgaaagca
gctacgaatgggccggctgcctttggttcagacatgaagaaacttgaacctacaaatggc
acggaaaaagaaaatgctcgtcccaagaaagggaaaaacaatgaggagggtaacaattcg
gataaaggcgaggaggatgaagaagacgaagctgcacgcaaaaacaggcttgggctcaac
aaaaagagtatggatgatgatgaggaaggtggaaaagatctagacttcgatttggatgat
gaaattgaaaaaggtgatgactgggagcacgaagaaacattcactgacgatgatgaggct
gtggatatagacccagaggagcgggcagatttagctcctgagattcctgctcctcccgaa
attaagcaggatgatgaagagaatgaagaagaaggtggtctaagcaagtctggcaaggag
ttgaaaaagctccttgggaaagctgctggactgaatgagtcagatgccgaggaggatgac
gaagacgatgatcaagaggatgagtcatctccagtgcttgctccaaaacagaaagatcaa
accaaagatgaacctgtagataacagcccagctaaacctacaccatcaggacatgctcgt
ggcacacctcctgcatccaaatctaagcaaaagaggaaatcgggtggtgatgatacaaaa
gcaactggcggtgcagcttccaaaaaagcaaaggtggaatctgatacaaaaacatcagct
gccaaagatgagacaccatcttcctcaaaacctgcatcaaaggccactgctgcatctaaa
actgccgcaaatgtatctcctgtcacagaggatgaaatcaggactgttcttcttgctgtt
gctcctgtcactacacaagatttggtatctagatttaagtctagactacgaggcccagag
gacaagaatgcttttgctgaaattctgaagaaaatctcgaagattcagaagactaatggc
cataattatgtcgtccttagagatgacaagaagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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