KEGG   Oryza brachyantha (malo sina): 102714927
Entry
102714927         CDS       T02995                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
obr  Oryza brachyantha (malo sina)
Pathway
obr03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:obr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    102714927
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:obr03021]
    102714927
   03036 Chromosome and associated proteins [BR:obr03036]
    102714927
Transcription machinery [BR:obr03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     102714927
   Coactivators
    SAGA/TFTC/STAGA complex
     102714927
Chromosome and associated proteins [BR:obr03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     102714927
    STAGA complex
     102714927
    TFTC complex
     102714927
    SAGA complex
     102714927
    SLIK complex
     102714927
SSDB
Motif
Pfam: WD40 TFIID_NTD2 ANAPC4_WD40 NBCH_WD40 Nup160 Cytochrom_D1 WD40_like PALB2_WD40
Other DBs
NCBI-GeneID: 102714927
NCBI-ProteinID: XP_006656305
UniProt: J3MGB1
Position
6:18377484..18386654
AA seq 654 aa
MEDEEMEKKVQQYLQRKGFRLTELALQEERNRVSTSSVSDVELARSENDPARYYDGYSKL
RTWAYSSLDLYKHELLRVLYPVFIHCFMDLVAEGHTQEARSFFCTFREDHELMHSRDLQK
LEGILSPSHLEEMELARSLRQNKFRIKLCEYSYELLLQYLQKTQALVVLGIINERITFEV
SAGQPSLISDDTDVVALVGTSKDLAKQINQKEVHWGLLEDSVEERMEKALLESDKTEAES
KDADAEDKKKSSEGGKQGGSAKKVKKDKLVGGATGKTNKSETSLVSVAPRVKPELTLPVI
PVEVEQSILEDLRNRAQLNSLALPSVSFYTFLNTHNGLNCSSISHDGSLVVGGFSDSSVK
VWDMSKIGQPPKTSSPSGENGSLGERISASDDGKRSYALFQGHSGPVYSAAFSPFGDFLL
SASSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRTARIWSMDKVQP
LRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQTGECIRMFIGHRSMVLSLAMSP
DGRYMASGDEDGTIMMWDLSSGRCVSPLVGHNSCVWSLAYSCEGALLASGSADCTVKLWD
VASSTKALKTDDAKVGSTNRLRMLKALPTKSTPVYTLRFSRRNLLFAAGALSLG
NT seq 1965 nt   +upstreamnt  +downstreamnt
atggaggacgaggagatggagaagaaggtgcagcagtacctgcagcggaaggggttccgc
ctaaccgagctcgcgctgcaggaggagcggaaccgcgtctccacctcctccgtctccgac
gtcgagctcgccaggtcagaaaatgatccagcaagatactatgatggctatagtaaacta
agaacatgggcgtacagttctcttgatctctacaagcatgaactactccgtgtcctttat
ccagtgtttatccattgcttcatggatctggtggcagagggacatacgcaggaagctcgg
tcctttttctgtacatttcgtgaggaccatgaactaatgcattcaagggatctccagaaa
ctggaaggcattctttctccttcacatttggaggaaatggaactagctcgatctttaagg
caaaataaattcagaattaagttatgtgagtattcatatgaattacttctccagtatctc
cagaaaacacaagctcttgtggtgcttggaataatcaatgaacgcataacttttgaagta
tccgctggtcagccatcattaatctctgatgacacggatgttgttgctctagttggaacc
agcaaggatttggcaaaacagataaatcagaaggaggtgcattgggggttgcttgaagat
tcagttgaagagcgtatggagaaagcacttttagaatcggataaaactgaagcagaaagc
aaggatgcggatgctgaagacaagaaaaagtcctccgaaggtgggaagcagggaggttct
gctaaaaaggtcaaaaaggataagcttgtaggaggagccacagggaaaaccaataaatcc
gaaacaagcctggtttcagtggcacctcgtgtgaaaccagagcttacacttccagtgatt
cctgttgaagttgagcagtcaattcttgaggacttgcgaaaccgtgcacagttgaatagc
cttgccttgccatctgttagcttctacacattccttaatacacataatgggctaaattgc
tcgtcgatttcgcatgatggctctttggttgtgggtgggttctctgactcgtcagtcaag
gtctgggatatgtcaaagattggccaaccacccaaaacatctagtccatcaggagagaat
ggatccctgggtgagcgtatatcagcatcagatgatgggaaaagatcatatgcattattc
caaggtcattctggaccagtttattctgctgcatttagcccgtttggagattttctcttg
tcagcatcctcagattcaacaattcgactatggagtactaagttgaatgccaatcttgtt
tgctacaaaggacacaactaccctgtttgggatgtccaattcagtccagttggtcattat
tttgctagcgcttctcatgacaggactgctcgaatttggtcaatggataaagtccaacct
ttacgaataatggctggacatctttctgatgttgattgtgtgcagtggcatgttaactgt
aactacattgccactggctctagtgacaaaactgtacgattatgggatgttcaaactggt
gaatgtatacggatgtttattggtcataggagtatggttttatcattggcaatgtctcct
gacgggcgatacatggcctctggagatgaagatggaaccatcatgatgtgggatctgtct
tctggtcgttgtgtttcaccactagtgggacacaactcttgtgtgtggtcacttgcttac
agctgtgaaggggcattacttgcatctggatcagctgattgcactgtgaaactctgggat
gttgcctccagcacaaaggcccttaagacagatgatgcaaaggttggctcaactaaccgg
ctgaggatgctcaaagctctccctacaaaatcaactcctgtttatactctccggttttct
cggagaaatcttttatttgcggccggtgccctctcgcttggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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