KEGG   Oceanisphaera avium: CBP12_08155
Entry
CBP12_08155       CDS       T04855                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ocm  Oceanisphaera avium
Pathway
ocm03410  Base excision repair
ocm03430  Mismatch repair
ocm03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ocm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    CBP12_08155
   03430 Mismatch repair
    CBP12_08155
   03440 Homologous recombination
    CBP12_08155
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ocm03400]
    CBP12_08155
DNA repair and recombination proteins [BR:ocm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     CBP12_08155
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     CBP12_08155
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CBP12_08155
SSDB
Motif
Pfam: DHH DHHA1 RecJ_OB DUF919
Other DBs
NCBI-ProteinID: ART80121
UniProt: A0A1Y0CXR7
Position
complement(1766879..1768609)
AA seq 576 aa
MTSSRLNIRRRQSLAHQLPDSLPALIQRLYASRGVVSPEQLNLSAANLLKPEFKGMAEAV
KVLVQGLEAQRSIVIVGDFDCDGATSSALMVHGLRAMGARQVQYLVPNRFDYGYGLSPQV
VEEVARMGGELLITVDNGISSVSGVAAANAKGMQVIVTDHHLPGNELPDAAAIVNPNQEG
CAFPSKNLAGVGVAFYLLLALRAALTEQGWFQRLGITAPNMGEYLDLVALGTVADVVALD
GNNRVLVHQGLQRMRAGRVRPGIQALIDISQRNPSRLVASDLGFALGPRLNAVGRLDDMS
MGVACLLSENLDEARKLAAMMDELNRERKAIEASMQHEALASLTKVNISQGELPHGLVLH
QDDWHQGVVGLVASRIKERYHRPVIAFAEAGEDELKGSGRSIPGVHLRDLLEEIDRQQPG
VIDKFGGHAMAAGLSLRKSALAPFKAAFERVAATWVSAELLAGEIVTDGDLASEELILPL
AEQVRAAGPWGQSFPEPLFDGEFRIIKQRLVGEKHLKLVVSIDEGRSLIDAIAFNVDLSV
WPNAAINKVQLVYKLDINEWQGKQSLQLIVDNIAPL
NT seq 1731 nt   +upstreamnt  +downstreamnt
atgacgtcatcacgccttaatattcgccgccgccaaagccttgctcatcaattgccagat
agcttacccgcacttattcagcgcctttatgccagtcgtggcgtggtcagccctgagcaa
cttaatttaagtgctgctaacttacttaagccagaatttaaaggcatggctgaggcggtc
aaggtgttggtgcaaggtttagaggctcagcgcagcatagtaatagtgggcgattttgac
tgtgatggtgctactagttcggctcttatggtgcatggcttgcgcgccatgggcgcgagg
caagtgcaatatttggtgcctaatcgcttcgattatggctatggcttaagcccgcaggtc
gtcgaagaagtggcgcgcatgggcggtgagctgttgatcaccgtcgacaatggcatttcc
agtgtaagtggagttgccgcagcaaatgcaaaaggtatgcaggtaatagtgaccgatcat
cacttgccaggtaatgagctgcccgatgcagcagccattgttaaccctaatcaagaaggc
tgtgcgtttccttctaaaaacttggcaggggtgggcgtggccttttatttattattagca
ctgcgcgccgctctcaccgagcaaggctggtttcagcgtttaggtattactgcacctaat
atgggtgaatacttagatctcgtggcactgggtacggtcgccgatgtggtggcgcttgat
ggcaataatcgggtattagtgcatcagggcttacagcgcatgcgcgccggtcgggtacgg
ccgggtattcaggcgctgatcgatatttcccagcgtaatccatcgcgcttagtggccagt
gatcttggctttgcgctggggccacgcttaaatgcagtagggcgccttgatgatatgtcg
atgggtgtggcttgtttactcagtgaaaatttagatgaagcacgaaagcttgctgccatg
atggatgagcttaaccgtgagcgtaaagccattgaagccagcatgcagcatgaagcgctg
gccagcctcactaaagttaatattagccaaggtgagttacctcatggcttagtgctgcat
caagatgactggcaccaaggcgtggtgggcttggtggcctcgcgtattaaagagcgctat
cacagaccggtcattgcctttgctgaagcgggagaagatgaacttaaaggctcgggccgc
tccattcctggcgtgcatttgcgggatttactagaagagatagaccgccaacagcctgga
gtcattgataaatttggtggtcacgccatggcggccggcttatctttaagaaaatcggca
ctggctccctttaaagccgcctttgagcgagtggcggcgacttgggtgagcgccgagtta
ttagctggtgaaattgtaacggatggtgaccttgcgagcgaagagctcatcttgccgtta
gcggagcaagtgcgcgccgctggtccttggggacagtcatttcctgagcccttatttgat
ggcgagtttagaattattaaacagcgtttagtgggtgaaaagcatttaaaattagtggtg
agcattgatgaaggtcgcagcctcattgatgctattgcctttaatgtggacttaagtgtc
tggcctaatgcggctatcaataaagtgcagctcgtatataagttagatattaatgagtgg
cagggtaaacaatcgctgcaactcattgttgacaatatagcgccgctataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (21)   

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