KEGG T01967: OCA4

Oligotropha carboxidovorans OM4: OCA4_c27950

Entry

OCA4_c27950 CDS T01967

Gene name

lig

Definition

ATP-dependent DNA ligase Lig (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

oco Oligotropha carboxidovorans OM4

Pathway

oco03410	Base excision repair
oco03420	Nucleotide excision repair
oco03430	Mismatch repair
oco03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:oco03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:oco03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:oco03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:oco03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N

Other DBs

NCBI-GI:

386031018

NCBI-GeneID:

12542625

UniProt:

F8BMG2

Position

complement(2978405..2980096)

AA seq 563 aa
MNRFAHLLDRLAYEPGRNNKLRLITAYFREVPDPDRGWALAALTGALSFRHAKPGLIRDL
ITARTDPALFALSYDYVGDLSETVALMWPSVHASTNGDAKHSPTLTEIVTTLHTLGKTEI
PAQLASWLDELDETGRWALLKLVTGGLRIGVSARLAKTAAAALGDKDPHEIELIWPGLAP
PYLDLFAWLEGRAEKPINRDPAPFRPVMLAHAIEDSDFAGLDPADFIAEWKWDGIRVQAV
SGRKSEEHVLARLYSRSGEDITASFPDLVPSLRLPGAIDGELLVLREGRVQSFNVLQQRL
NRKSVTPKLMKDYPIHLRAYDLLAEGEDDLRDLPFIDRRARLERFIARLDDPRIDLSPQV
VFATWDDLTAARANPSDAGAGDDADAVEGVMLKRRDALYLPGRQRGQWWKWKHDPHVIDA
VLMYAQRGHGKRSSYYSDYTFGVWTVGEGGDELVPVGKAYFGFTDEELVQIDRFVRRNTV
EKFGPVRHVVHEPNKGLVLEVAFEGLARSPRHKSGVAMRFPRISRLRWDKPPGEADRLET
LKRLLKEDLASVVAEGLLGRRAG

NT seq 1692 nt +upstreamnt +downstreamnt
atgaaccgctttgcgcacctgctcgatcgcctcgcttatgagcccggacgcaacaacaag
ctgcggttgatcacagcgtattttcgtgaggtgccggaccccgatcgcggctgggcgctg
gcggcactgaccggtgcactgtcgtttcgccacgccaagccgggcctgatccgcgacctg
atcacggcgcgcaccgatcccgcgctgttcgcactatcttacgattatgtcggcgacctc
tcggaaaccgtggcgctgatgtggccttccgttcatgcctccacgaacggcgatgcgaag
cattctccgaccctcaccgaaatcgtcaccacgttgcatacgcttggcaagaccgagatt
cccgcgcagcttgcaagctggcttgacgaactcgacgagaccggacgctgggcgctcttg
aagctcgttaccggtggcttgcgcatcggcgtctccgcgcggcttgccaagaccgcggcc
gcagcgcttggtgacaaggacccgcatgagatcgaattgatatggccaggcctcgcgccg
ccttatctcgatctgttcgcctggctggaaggtcgcgctgaaaagccgatcaatcgcgat
cctgcaccatttcgcccggtgatgctggcgcatgccatcgaggatagcgattttgcggga
ctcgatccggcagatttcatcgcggaatggaagtgggacggcatccgcgtgcaggctgtc
agtggccgcaagagcgaggagcatgtcctcgcgcggctctattcgcgtagcggtgaggac
atcacggcgagctttcccgatctcgtaccgtcgctacgcctgcccggcgcaatcgatggc
gagcttctggtgctgcgtgaggggcgggtacagagcttcaacgtgctgcagcagcggctc
aaccgcaaaagcgtgacgccgaagctgatgaaagattatccgatccatctgcgtgcttac
gatctacttgccgaaggtgaggatgacctgcgcgaccttccgtttatcgatcgtcgcgca
cggctcgagaggttcattgcgcggctggatgatccgcggatcgatctgtcgccgcaggtg
gtattcgcgacatgggatgacctcaccgccgcgcgtgccaatccatcagatgcaggcgca
ggcgacgatgcggatgccgtggaaggtgtgatgctgaagcgccgtgatgcgctctatctt
cccggccggcagagagggcagtggtggaagtggaaacatgatccgcatgtgatcgacgcc
gtgctgatgtatgcccagcgtggccacggcaaacgctcctcctattattcggattacacg
tttggggtctggactgtcggtgaaggtggcgatgagcttgtgccggtgggcaaggcatat
tttggctttaccgacgaggagcttgtgcagatcgaccgctttgtccgccgcaacacggtc
gagaaattcggccccgtgcgtcatgtggtgcatgagccgaacaagggacttgtgctggag
gtggcgtttgaagggttggcacgctcaccgcgccataaatccggcgtcgcgatgcgcttt
ccgcgcatcagccggctgcgctgggataagccgccgggcgaggctgaccggctggagacg
ttgaaacgattgttgaaggaagacctcgcgtctgtggtcgccgaagggttgcttggccga
cgtgcaggatga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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