KEGG   Oryctolagus cuniculus (rabbit): 100340815
Entry
100340815         CDS       T03373                                 
Name
(RefSeq) collagen alpha-3(IX) chain
  KO
K08131  collagen type IX alpha
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu04151  PI3K-Akt signaling pathway
ocu04510  Focal adhesion
ocu04512  ECM-receptor interaction
ocu04820  Cytoskeleton in muscle cells
ocu04974  Protein digestion and absorption
ocu05165  Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    100340815
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    100340815
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    100340815
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    100340815
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    100340815
 09160 Human Diseases
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    100340815
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:ocu00535]
    100340815
Proteoglycans [BR:ocu00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   100340815
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 100340815
NCBI-ProteinID: XP_051685389
Ensembl: ENSOCUG00000001968
Position
Unknown
AA seq 680 aa
MARAPALLLLLLGQLLAAAAAQKTGPRGPPGPQGPPGKPGKDGVDGEAGPPGLPGPSGPK
GLPGKPGTPGEAGLPGLPGVDGLTGQDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPPG
EAGASGLPGGIGLRGPPGPSGLPGLPGPPGPPGPPGQPGVLPEGATDLQCPAICPPGPPG
PPGMPGFKGPAGYKGEQGEAGKDGEKGNPGSPGPAGLPGTVGLQGPRGAQGLPGPLGPPG
DRGPIGFRGPPGIPGAPGKAGDRGERGAEGFRGPKGDLGRPGPKGLPGVAGPGGEPGMPG
KAGRDGVPGLDGEKGEAGRGGAPGEKGPDGLPGLPGRAGSKGEKGEPGRAGELGEAGPSG
EPGVPGDAGVPGERGEAGHRGSAGALGPQGPQGAPGTRGFQGQKGSAGEPGLPGPQGLRG
DVGDRGPGGAAGLKGDQGVAGSDGLPGDKGEPGPSGPVGPKGESGSRGELGPKGIQGPNG
TSGVQGVPGPPGPLGPQGEQGVPGITGKPGVPGKAASEQRIRELCGGMVSEQVAQLAAHL
RKPLAPGSIGRPGPAGPPGPPGPPGSIGHPGARGPPGYRGPPGELGDPGPRGSPGDRGDK
GAAGSGLDGPDGDQGLQGPQGMPGASKDGQDGAHGEPGLPGDPGLPGAVGAQGTPGICDT
SACQGAVLGGGGEKSGPRSS
NT seq 2043 nt   +upstreamnt  +downstreamnt
atggcccgcgcgcccgccctgctcctgctgcttctcgggcagctcctggcggccgccgcg
gcgcagaaaaccggaccgcgagggccccccggcccccaagggccacctgggaagccggga
aaggatggcgtcgacggagaagctggtccccccggtctgcctgggccctcgggacccaaa
gggctgccagggaagccggggacgccgggcgaggccggactgccggggctgcctggagtg
gatggtctgactgggcaggatggaccccctggacccaagggcgctcctggagagcggggc
agtctgggacccccagggccgcccgggctggggggcaaaggcctccccggacccccggga
gaggcaggagcgagcggcctgcctggagggatcggcctccgtggccccccgggaccctct
ggactcccaggcctccccggccctcctggccctcctggccctcccggacagccaggggtc
ctccccgaaggcgccactgaccttcagtgcccagccatctgcccaccaggcccccctggg
ccaccgggaatgccagggttcaaggggccggctggctacaagggggagcagggagaggcg
ggcaaggacggcgagaagggtaaccctggctctccagggcccgctggcctcccaggcact
gtggggctgcagggcccccggggagcacaaggacttccagggccacttggaccccccggg
gaccggggtcctatcgggttccgaggtccccctgggatcccaggagcacctggaaaagcg
ggtgacagaggcgagaggggcgcagaggggttccgcggccccaagggcgacctcggcaga
cctggtcccaaaggactccccggagtggccgggcctggcggagagccgggaatgccgggc
aaggctggccgggacggcgtgccaggcctcgatggcgagaagggagaggcaggtcgcggc
ggtgccccgggagagaaaggccccgacgggctgccgggcctccccggaagagcggggtcc
aagggcgagaagggagaaccgggccgagctggggagctgggcgaagccggcccctcggga
gagccgggcgtccctggagacgctggcgtgcctggggaacgcggcgaggctggccacagg
ggctctgcgggggcccttggcccgcaaggcccccaaggggcccctggcacccgaggcttc
cagggccagaagggcagcgcaggagagcctggccttccaggcccccagggcctccgaggt
gacgtgggtgatcggggcccaggaggcgccgcaggcctcaagggagaccagggagttgca
ggttccgacggtcttcctggggacaaaggcgagccgggtcccagtggcccagtcggaccg
aaaggagagtccggcagccgaggggagctgggccccaaaggtatccagggccccaacggc
accagcggcgtccagggcgtcccgggcccccccggccccctgggcccccagggcgagcag
ggtgtccctggcatcaccgggaaaccaggagtcccgggcaaagcggccagcgagcagcgc
atccgagagctgtgcggggggatggtgagcgagcaagtcgcacagctggctgcgcaccta
aggaagccgttagccccgggctccatcggccggcctggcccagcgggtccccccgggcca
ccgggccccccaggctccatcggtcacccaggggcccgagggccccccggatatcgtggg
ccccccggagagctgggagaccccggacccagagggagcccaggggaccgtggagacaaa
ggcgcggcgggctccgggctggacgggcctgacggagaccagggactgcaaggaccccaa
ggcatgcctggcgcaagcaaagacggccaagacggcgctcacggcgagcctggcctgccc
ggggatcccggcctgcccggggccgtcggtgcgcaggggactccagggatctgcgacacc
tcggcctgccaaggagccgtgttaggagggggcggggaaaaatcaggtcccagaagctcc
tga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (6)   
   KEGG PATHWAY (6)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (1)   
   Pfam (1)   
All databases (38)   

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