KEGG   Oryctolagus cuniculus (rabbit): 100349155
Entry
100349155         CDS       T03373                                 
Name
(RefSeq) antigen peptide transporter 1
  KO
K05653  ATP-binding cassette, subfamily B (MDR/TAP), member 2 [EC:7.4.2.14]
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu02010  ABC transporters
ocu04145  Phagosome
ocu04612  Antigen processing and presentation
ocu05163  Human cytomegalovirus infection
ocu05168  Herpes simplex virus 1 infection
ocu05169  Epstein-Barr virus infection
ocu05170  Human immunodeficiency virus 1 infection
ocu05340  Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   02010 ABC transporters
    100349155
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    100349155
 09150 Organismal Systems
  09151 Immune system
   04612 Antigen processing and presentation
    100349155
 09160 Human Diseases
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    100349155
   05168 Herpes simplex virus 1 infection
    100349155
   05163 Human cytomegalovirus infection
    100349155
   05169 Epstein-Barr virus infection
    100349155
  09163 Immune disease
   05340 Primary immunodeficiency
    100349155
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:ocu02000]
    100349155
Enzymes [BR:ocu01000]
 7. Translocases
  7.4  Catalysing the translocation of amino acids and peptides
   7.4.2  Linked to the hydrolysis of a nucleoside triphosphate
    7.4.2.14  ABC-type antigen peptide transporter
     100349155
Transporters [BR:ocu02000]
 ABC transporters, eukaryotic type
  ABCB (MDR/TAP) subfamily
   ABCB2, 3, 8, 9, 10 subgroups
    100349155
SSDB
Motif
Pfam: ABC_membrane ABC_tran SMC_N AAA_16 AAA_21 ABC_ATPase AAA_29 AAA_22 AAA_25 AAA_23 AAA_15 AAA_33 Zeta_toxin AAA_30 SRP54
Other DBs
NCBI-GeneID: 100349155
NCBI-ProteinID: XP_002714647
Ensembl: ENSOCUG00000002135
UniProt: G1SGW1
Position
12:132386989..132396912
AA seq 742 aa
MASSGSPAPCRASLAWLGAPLLLLADWALLRVALPGIFSRLLPPAWPLLRVWAAGLGRWA
VLRLGARAVLEATAGGQGRSARVAGGLAALEPLAAALGLALPGLALFRELVSWGVRRDAG
STRLLHWGSRPDAFALSYAAALPAVALWHLLGSLWRPVRPGGSVDAVRRLLGCLGPDIRR
LPLVLTLLVLSCLGEMAIPFFTGRLTDWIVQDGTAAAFAGNLTLMSILTVASALLEFLGD
GIYNSTMDRSHAHLQGEVFRAVLRQETEFFQQNQTGAITSRVTEDTSTLSESLSEKLSLL
LWYLVRGLCLMGLMLWESLSLTMVTLLTLPLLFLLPKKLGKWYELLEVQVRESLAESSQV
AIEALSAMPTVRSFANEEGEAQKFRKKLQEVKTFNQKQAVAYAVNLWSTSISGMLLKVVI
LYMGGRLVTSGAVSSGNLVTFVLYQIQFTTAVEVLLSTYPHVQKAVGSSKKIFEYLDRTP
CSPPSGQLIPVNLNGIVKFQDVSFAYPNRPEVSVLQGLTLTLRPGEVTALVGPNGSGKST
VAALLQNLYQPTRGRLLLDGKPLPQYEHCYLHRQVAAVGQEPQLFARSLRENIAYGLMET
PTLEEVIAAAVESGAHGFISGLPHGYNTDVGEAGGQLSGGQRQAVALARALIRKPRVLIL
DDATSALDADNQLRVERILYESPGRASRAVLLITQRLSLVEQAHHILFLEGGVVCEEGTH
QQLMEKRGRYWAMVEAPAGAPE
NT seq 2229 nt   +upstreamnt  +downstreamnt
atggccagctcggggtcgccggctccgtgccgggcgtcgctggcgtggctgggggcgccg
ctgctgcttctggccgactgggcgctgctccgggtggcgctgcccggcatattctcgcgc
ctgctgcccccggcgtggccgctgctccgggtgtgggcggcgggcctgggccgctgggcc
gtgctgcggctgggggcccgcgccgtcctcgaggccacggctggaggccagggccggagt
gcacgtgtcgcgggaggcctggccgctctggagccgctggcggccgcgctgggcttggcc
ctgccaggacttgccttgttccgagagctggtctcatggggcgtccgccgggacgccggc
agcacccggctcctgcactggggaagtcgccccgacgccttcgcgctcagctatgcggcc
gccctgcccgcggtcgccctgtggcacctgctcgggagcctgtggcggcccgttcgcccg
gggggctctgtagacgccgtgcgccggctcctgggctgcctgggcccggacatccgtcgc
ctgccgctcgtcctgaccctgctggtcctctcctgcctaggggagatggccattcctttc
ttcactggccgcctcactgactggattgtccaggatgggacagccgctgccttcgctgga
aacttaactctcatgtccattctcaccgtagccagtgccctgctggagttcctgggtgat
gggatctacaacagcaccatggaccgctcacacgcccacttgcagggagaggtgtttcgg
gccgtcctgcgccaggagacggagtttttccagcagaaccaaacaggtgccatcacatca
cgagtaacagaggacacgtccaccctgagtgagtcgctgagtgagaagctgagcctgttg
ctgtggtacctggtgcgggggctgtgtctcatggggctcatgctctgggagtcactgtcc
ctcaccatggtcacactgctcaccctgcctctgcttttccttctgcctaagaagctggga
aaatggtacgagttgctggaagtgcaggtgcgggaatctctggcagagtccagccaggtg
gccattgaagctctgtccgctatgcctacagtccggagcttcgccaatgaggagggcgag
gcccagaagtttaggaaaaagctgcaggaagtcaagaccttcaaccagaagcaggccgtg
gcctatgcagttaacctgtggagcaccagtatctcagggatgctgctgaaggtggtaatc
ctgtacatgggggggcggctggtgacgagtggggctgtgagcagtgggaacctcgtcacc
tttgttctctaccagatccagttcaccacagctgttgaggtcctgctctccacctatccc
catgtgcagaaggctgtgggctcctccaagaaaatatttgaatacctggaccggacccct
tgcagcccacctagtggtcagttgattcccgtgaacctgaatgggattgtcaagttccaa
gacgtctcctttgcctaccccaaccgtccagaagtctcagtgctgcagggcctgacactc
accctccgtcccggggaggtgacggcgctggtgggacccaacgggtctgggaagagcacg
gtggccgcgctgctgcagaatctgtaccagcccaccagggggcgcctgctactggacggg
aaaccccttccccaatatgagcactgctacctgcacagacaggtggctgcagtggggcaa
gagccacagctatttgcaagaagtcttagagaaaatattgcctacggcctgatggagacg
ccgactctggaggaagtcatcgctgctgcagtggagtcaggggcccatggcttcatttcg
ggactcccgcatggctacaacacagatgtaggggaagctggaggccaactgtcagggggg
cagcggcaggcagtggccttggcccgagctttgatccggaaaccacgagtgctcatccta
gacgatgccaccagtgccctggatgcagacaaccagttacgggtggagcggatcctgtat
gaaagccctgggagggcctctcgcgctgtgctgctcatcacgcagcgcctcagcttggtg
gagcaggcgcaccacatcctctttctggaaggaggcgttgtgtgtgaggagggaacccac
cagcagctcatggagaagaggggacgctactgggccatggtggaagctcctgcaggcgct
ccagaatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (8)   
   KEGG PATHWAY (8)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (15)   
   Pfam (15)   
All databases (50)   

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